Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 2.7e-245 851.7 460 100.0
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.9e-21 107.5 331 30.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.3e-21 105.9 291 31.3
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.4e-20 104.4 327 31.8
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.2e-20 104.0 273 30.4
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 4.1e-20 103.6 394 27.7
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 5.4e-20 103.2 289 30.8
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 7.0e-20 102.8 288 32.6
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 7.0e-20 102.8 317 29.7
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 7.0e-20 102.8 318 32.4
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 9.2e-20 102.4 382 28.3
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 9.2e-20 102.4 295 30.5
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 2.0e-19 101.3 365 27.4
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 4.6e-19 100.1 292 30.5
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.8e-19 99.4 288 30.9
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.8e-19 99.4 285 30.2
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 7.8e-19 99.4 266 32.3
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.0e-18 99.0 290 30.3
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.3e-18 98.6 282 29.8
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-18 98.6 324 28.7
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 1.3e-18 98.6 302 27.8
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.7e-18 98.2 323 28.5
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.7e-18 98.2 323 28.5
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.3e-18 97.8 277 30.3
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 2.3e-18 97.8 324 28.4
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 3.0e-18 97.4 291 28.9
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 3.0e-18 97.4 272 29.8
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.0e-18 97.4 290 29.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.0e-18 97.4 410 26.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 3.9e-18 97.1 292 30.1
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.9e-18 97.1 399 27.8
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 3.9e-18 97.1 287 31.4
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.0e-18 96.7 290 29.3
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.0e-18 96.7 290 30.0
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.0e-18 96.7 288 28.5
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 5.0e-18 96.7 283 29.0
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 5.0e-18 96.7 290 29.7
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 6.6e-18 96.3 289 29.1
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 6.6e-18 96.3 290 29.3
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.6e-18 96.3 290 29.3
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 6.6e-18 96.3 293 28.7
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 6.6e-18 96.3 386 26.9
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 8.6e-18 95.9 272 29.4
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 8.6e-18 95.9 272 29.4
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 8.6e-18 95.9 288 29.5
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 8.6e-18 95.9 288 28.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 8.6e-18 95.9 274 28.5
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 8.6e-18 95.9 289 29.1
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 8.6e-18 95.9 369 26.6
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.1e-17 95.5 282 30.1
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-17 95.5 282 29.8
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.1e-17 95.5 286 29.4
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.1e-17 95.5 369 26.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.1e-17 95.5 296 29.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.5e-17 95.1 282 29.8
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.9e-17 94.7 288 30.2
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-17 94.7 282 28.7
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-17 94.7 282 28.7
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-17 94.7 282 28.7
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-17 94.7 282 28.7
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.9e-17 94.7 282 28.7
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 1.9e-17 94.7 286 28.7
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.9e-17 94.7 290 29.7
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 2.5e-17 94.4 318 28.6
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.5e-17 94.4 281 29.9
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.5e-17 94.4 301 29.6
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.3e-17 94.0 296 29.1
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.3e-17 94.0 308 28.9
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.3e-17 94.0 279 28.3
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 3.3e-17 94.0 292 28.4
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.3e-17 94.0 380 26.8
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 3.3e-17 94.0 328 29.3
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 4.3e-17 93.6 301 29.6
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 4.3e-17 93.6 281 29.2
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.3e-17 93.6 301 29.6
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 4.3e-17 93.6 307 27.7
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 4.3e-17 93.6 279 29.0
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 5.6e-17 93.2 289 28.0
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 5.6e-17 93.2 385 26.5
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 5.6e-17 93.2 288 29.2
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 9.5e-17 92.4 372 25.8
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 9.5e-17 92.4 330 27.0
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.2e-16 92.0 362 28.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.2e-16 92.0 290 30.0
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.6e-16 91.7 288 29.2
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 2.1e-16 91.3 285 28.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.1e-16 91.3 317 28.1
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.8e-16 90.9 282 29.1
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.8e-16 90.9 285 28.4
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.8e-16 90.9 369 25.2
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.6e-16 90.5 328 29.3
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.2e-16 89.7 284 29.2
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.1e-15 89.0 295 29.2
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.1e-15 89.0 373 27.1
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.1e-15 89.0 288 27.1
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.4e-15 88.6 284 29.6
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.4e-15 88.6 287 27.2
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.8e-15 88.2 273 28.6
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 3.1e-15 87.4 283 29.0
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 4.0e-15 87.0 287 27.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 4.0e-15 87.0 309 27.2
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.0e-15 87.0 324 26.9
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 4.0e-15 87.0 287 27.5
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 5.2e-15 86.7 293 30.0
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 6.8e-15 86.3 282 29.4
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 6.8e-15 86.3 286 27.3
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.9e-15 85.9 308 28.2
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 8.9e-15 85.9 297 29.3
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 8.9e-15 85.9 283 27.6
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 8.9e-15 85.9 288 28.5
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.2e-14 85.5 309 26.5
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.5e-14 85.1 309 26.5
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.4e-14 84.0 284 27.8
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 7.5e-14 82.8 273 27.5
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 9.9e-14 82.4 368 25.8
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.9e-12 78.2 363 24.2
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 4.1e-12 77.0 279 26.9
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 5.4e-12 76.6 269 26.8
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 5.4e-12 76.6 360 24.2
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.6e-11 75.1 279 26.5
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 3.5e-11 73.9 171 32.2
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.5e-11 73.9 286 26.9
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.0e-10 72.4 269 27.5
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.3e-10 72.0 286 25.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 5.6e-09 66.6 359 23.7
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-08 65.1 160 31.2
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.6e-08 63.9 97 40.2
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 6.2e-08 63.2 159 30.8
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 8.1e-08 62.8 166 31.9
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.1e-07 60.8 141 32.6
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 4.0e-07 60.5 159 30.2
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 6.8e-07 59.7 63 44.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 6.8e-07 59.7 63 44.4
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 8.9e-07 59.3 239 25.5
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.2e-06 58.9 176 27.3
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 3.4e-06 57.4 170 27.6
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 5.8e-06 56.6 147 31.3


User provided reference genes

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