Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 6.2e-191 670.6 335 100.0
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 5.9e-93 345.1 324 53.7
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 7.6e-48 195.3 183 52.5
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 6.5e-31 139.0 357 33.1
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.6e-29 134.4 337 31.5
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 2.7e-29 133.7 331 29.6
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 6.0e-29 132.5 331 30.2
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 6.0e-29 132.5 333 30.3
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.0e-28 131.7 309 29.8
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.3e-28 131.3 334 29.3
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 2.3e-28 130.6 318 32.4
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.3e-28 130.6 318 30.8
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.9e-28 129.8 300 31.7
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-28 129.8 328 28.7
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 3.9e-28 129.8 329 29.8
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 3.9e-28 129.8 329 29.8
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 5.1e-28 129.4 331 29.6
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 6.7e-28 129.0 318 30.2
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.1e-27 128.3 300 31.3
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.5e-27 127.9 322 30.1
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.9e-27 127.5 333 29.1
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.9e-27 127.5 329 29.8
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 2.5e-27 127.1 330 29.7
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 2.5e-27 127.1 323 30.0
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 3.3e-27 126.7 336 30.7
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 3.3e-27 126.7 314 30.9
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 3.3e-27 126.7 336 30.4
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.3e-27 126.3 314 30.9
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 5.7e-27 125.9 335 29.3
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 5.7e-27 125.9 318 29.6
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.7e-27 125.9 325 30.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 5.7e-27 125.9 328 27.7
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 5.7e-27 125.9 336 30.1
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 5.7e-27 125.9 320 29.7
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 7.4e-27 125.6 328 28.7
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 7.4e-27 125.6 306 32.0
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 9.7e-27 125.2 336 28.0
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 1.3e-26 124.8 329 28.6
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 2.2e-26 124.0 332 29.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 2.2e-26 124.0 329 28.9
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 2.8e-26 123.6 329 28.6
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 2.8e-26 123.6 320 30.3
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 2.8e-26 123.6 331 29.6
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 2.8e-26 123.6 301 29.2
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.7e-26 123.2 314 29.9
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 3.7e-26 123.2 303 34.0
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 4.8e-26 122.9 322 28.9
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 4.8e-26 122.9 328 28.4
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 4.8e-26 122.9 328 28.7
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 4.8e-26 122.9 328 28.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 4.8e-26 122.9 328 28.7
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 6.3e-26 122.5 332 28.6
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 8.2e-26 122.1 332 29.5
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 8.2e-26 122.1 327 30.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 8.2e-26 122.1 328 29.3
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 8.2e-26 122.1 309 29.4
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 8.2e-26 122.1 331 29.6
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.1e-25 121.7 304 31.2
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.1e-25 121.7 304 31.2
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.1e-25 121.7 320 30.0
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 1.4e-25 121.3 323 30.3
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.4e-25 121.3 284 30.6
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.4e-25 121.3 319 29.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.4e-25 121.3 330 27.9
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.4e-25 121.3 329 28.9
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.8e-25 120.9 326 28.8
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.4e-25 120.6 322 29.5
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 2.4e-25 120.6 320 30.3
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 2.4e-25 120.6 314 29.6
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.4e-25 120.6 321 29.9
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 2.4e-25 120.6 310 28.7
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 3.1e-25 120.2 328 27.7
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 3.1e-25 120.2 332 30.4
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 3.1e-25 120.2 320 28.8
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 4.1e-25 119.8 205 34.6
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 4.1e-25 119.8 332 28.9
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.3e-25 119.4 309 28.8
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 5.3e-25 119.4 329 29.5
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 6.9e-25 119.0 336 28.0
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 6.9e-25 119.0 278 32.7
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 9.0e-25 118.6 325 30.8
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.2e-24 118.2 321 28.0
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.2e-24 118.2 319 28.8
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.0e-24 117.5 333 27.9
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 2.0e-24 117.5 320 29.4
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 2.0e-24 117.5 318 28.6
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 3.4e-24 116.7 320 29.7
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 4.5e-24 116.3 201 33.8
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 4.5e-24 116.3 307 30.3
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 4.5e-24 116.3 316 27.5
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 7.6e-24 115.5 324 28.1
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-23 114.4 322 27.3
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.2e-23 114.0 304 30.9
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 2.2e-23 114.0 318 29.2
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 2.9e-23 113.6 247 33.2
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.8e-23 113.2 301 29.9
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 3.8e-23 113.2 302 28.5
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 3.8e-23 113.2 325 28.0
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 3.8e-23 113.2 321 28.3
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.0e-23 112.8 282 28.4
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 8.5e-23 112.1 310 30.3
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 8.5e-23 112.1 326 29.8
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.1e-22 111.7 325 27.7
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.4e-22 111.3 320 28.1
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.4e-22 111.3 309 27.5
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.9e-22 110.9 324 27.8
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 2.5e-22 110.5 321 28.7
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-22 110.5 324 30.2
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 4.2e-22 109.8 312 29.8
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 5.5e-22 109.4 330 29.7
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-22 108.6 303 29.0
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-22 108.6 313 28.8
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-21 108.2 332 27.7
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.1e-21 107.5 219 32.0
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.6e-21 106.3 305 27.9
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 4.6e-21 106.3 306 28.1
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 7.9e-21 105.5 313 28.4
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.4e-20 104.8 357 26.6
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 2.3e-20 104.0 392 25.3
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 6.7e-20 102.4 316 26.6
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 6.7e-20 102.4 293 27.3
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 6.7e-20 102.4 315 27.6
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 8.8e-20 102.1 356 27.0
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-19 101.7 299 29.4
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-19 99.4 312 28.8
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 7.4e-19 99.0 302 29.1
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-19 98.6 311 28.6
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-18 98.2 310 26.8
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.8e-18 96.3 323 28.5
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-18 96.3 197 32.5
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 8.2e-18 95.5 203 32.0
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 3.1e-17 93.6 320 27.2
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 2.0e-16 90.9 258 27.9
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 1.4e-14 84.7 224 30.8
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.2e-13 81.6 219 29.7
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 4.7e-13 79.7 307 26.4
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 7.9e-13 79.0 297 27.9
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.1e-12 76.3 310 25.5
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-11 72.0 193 30.1
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 2.4e-09 67.4 144 29.9
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.5e-08 64.7 348 23.0
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 4.5e-08 63.2 127 30.7


User provided reference genes

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