Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 0.0e+00 1248.4 628 100.0
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 4.2e-76 290.0 564 32.1
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 3.0e-74 283.9 547 33.6
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.0e-73 281.2 544 33.1
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.0e-73 281.2 547 33.5
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.7e-73 279.6 547 33.3
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.7e-73 279.6 547 33.3
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.1e-71 275.4 559 31.7
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 9.2e-71 272.3 547 32.9
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.2e-70 271.9 552 31.7
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 3.5e-70 270.4 548 31.8
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 5.9e-70 269.6 550 31.8
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 2.3e-69 267.7 543 31.9
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 2.9e-69 267.3 545 31.6
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 3.9e-69 266.9 548 31.9
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 5.0e-69 266.5 539 33.2
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 6.6e-69 266.2 545 32.8
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.6e-69 265.8 536 31.5
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 2.5e-68 264.2 542 32.3
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 5.6e-68 263.1 545 32.5
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 9.5e-68 262.3 548 31.4
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.2e-67 261.9 547 31.3
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 2.1e-67 261.2 562 30.8
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 2.8e-67 260.8 554 30.7
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 3.6e-67 260.4 554 30.7
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 8.0e-67 259.2 548 30.7
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.0e-66 258.8 548 31.6
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.0e-66 258.8 543 31.5
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.4e-66 258.5 552 30.3
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 2.3e-66 257.7 546 30.8
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 4.0e-66 256.9 548 31.8
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.0e-66 256.9 548 30.3
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 4.0e-66 256.9 548 30.3
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 4.0e-66 256.9 539 31.2
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.2e-66 256.5 548 30.1
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.2e-65 255.4 555 30.5
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.2e-65 255.4 545 31.4
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 1.5e-65 255.0 563 30.9
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.5e-65 255.0 553 30.7
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 2.0e-65 254.6 556 29.7
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 3.4e-65 253.8 546 30.2
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 3.4e-65 253.8 553 30.9
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 4.4e-65 253.4 546 30.4
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 4.4e-65 253.4 553 30.9
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 5.8e-65 253.1 546 30.0
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 7.5e-65 252.7 555 31.0
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 9.8e-65 252.3 551 30.7
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.8e-65 252.3 551 30.7
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 9.8e-65 252.3 547 31.1
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 2.2e-64 251.1 553 30.4
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 4.9e-64 250.0 557 29.4
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 4.9e-64 250.0 546 30.2
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 4.9e-64 250.0 544 30.1
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 6.4e-64 249.6 545 30.6
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 8.3e-64 249.2 579 29.2
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 1.1e-63 248.8 548 29.6
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 1.1e-63 248.8 532 30.3
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.4e-63 248.4 556 30.9
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.9e-63 248.1 540 30.2
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 5.4e-63 246.5 546 30.2
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 7.0e-63 246.1 496 31.9
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.2e-63 245.7 551 30.5
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 9.2e-63 245.7 554 30.7
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.2e-62 245.4 551 30.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 1.2e-62 245.4 546 30.6
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 2.0e-62 244.6 473 33.0
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 2.0e-62 244.6 551 30.7
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 3.5e-62 243.8 546 30.4
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 3.5e-62 243.8 553 29.8
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 1.3e-61 241.9 550 29.5
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.3e-61 241.9 554 29.6
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.7e-61 241.5 546 29.7
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 2.3e-61 241.1 585 30.3
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.0e-61 240.7 601 29.3
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.9e-61 240.4 601 29.1
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 3.9e-61 240.4 546 30.4
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 8.6e-61 239.2 568 30.1
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 5.6e-60 236.5 479 32.6
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 7.3e-60 236.1 543 31.9
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.2e-59 235.3 536 29.3
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.6e-59 235.0 548 30.3
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 4.7e-59 233.4 409 33.5
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 8.9e-58 229.2 496 29.6
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 1.2e-57 228.8 421 33.0
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.7e-56 224.9 416 34.4
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 8.3e-56 222.6 470 31.9
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 4.1e-55 220.3 562 28.5
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 5.4e-55 219.9 479 32.2
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 7.1e-55 219.5 627 27.0
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 3.9e-53 213.8 537 29.2
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 6.6e-53 213.0 608 28.1
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 4.3e-52 210.3 555 29.7
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 8.1e-51 206.1 573 26.9
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 6.8e-50 203.0 377 33.7
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 6.8e-50 203.0 642 26.2
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 8.9e-50 202.6 377 34.0
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.4e-47 195.3 327 32.1
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 7.1e-47 193.0 273 38.1
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 5.1e-45 186.8 563 26.8
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 6.6e-45 186.4 414 29.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.6e-43 181.8 552 27.5
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.8e-42 178.3 392 30.9
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.2e-41 175.6 457 29.1
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.6e-41 174.5 281 37.7
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 4.9e-40 170.2 380 30.5
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 1.1e-39 169.1 212 41.0
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 5.1e-37 160.2 319 32.3
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 5.1e-37 160.2 527 26.4
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 7.3e-36 156.4 298 33.2
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.1e-34 152.5 268 33.6
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 1.1e-31 142.5 169 42.0
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 7.9e-30 136.3 224 35.7
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 3.0e-29 134.4 381 27.0
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.5e-28 132.1 168 38.7
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 7.3e-28 129.8 606 23.4
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.9e-24 117.1 228 32.9
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.9e-23 115.2 149 39.6
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 5.6e-20 103.6 179 34.6
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 1.3e-19 102.4 109 46.8
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 7.9e-14 83.2 302 25.5
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.3e-13 82.4 233 28.8
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.8e-13 82.0 166 32.5
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.1e-12 79.3 105 38.1
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 2.8e-11 74.7 279 23.3
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.0e-09 68.6 195 28.7
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 3.4e-09 67.8 175 28.0
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 5.8e-09 67.0 129 31.8


User provided reference genes

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