Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 0.0e+00 1170.2 592 100.0
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.5e-75 288.1 593 33.4
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 2.9e-74 283.9 593 33.2
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 4.9e-74 283.1 582 34.2
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 8.4e-74 282.3 585 33.7
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 8.4e-74 282.3 584 34.6
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.1e-73 282.0 590 33.1
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 1.4e-73 281.6 583 33.8
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 1.9e-73 281.2 583 32.9
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.9e-73 281.2 593 33.1
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 2.4e-73 280.8 590 33.4
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 5.4e-73 279.6 582 33.2
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 5.4e-73 279.6 589 32.1
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 5.4e-73 279.6 594 33.0
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 7.1e-73 279.3 583 34.3
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 9.2e-73 278.9 582 32.5
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.6e-72 278.1 582 32.5
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.6e-72 278.1 593 32.9
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.6e-72 278.1 599 33.9
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 2.7e-72 277.3 582 32.3
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 2.7e-72 277.3 583 34.1
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 2.7e-72 277.3 586 33.3
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 3.5e-72 276.9 581 32.5
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 4.6e-72 276.6 592 32.9
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 4.6e-72 276.6 589 32.8
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 4.6e-72 276.6 582 33.0
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.3e-71 275.0 586 34.3
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.7e-71 274.6 585 32.5
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 3.0e-71 273.9 585 33.8
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.0e-71 273.9 594 32.8
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 3.0e-71 273.9 549 34.2
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 3.0e-71 273.9 597 33.0
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 3.9e-71 273.5 593 33.2
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 3.9e-71 273.5 582 32.3
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 3.9e-71 273.5 592 32.8
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 5.1e-71 273.1 590 33.9
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 6.6e-71 272.7 583 33.1
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 6.6e-71 272.7 581 32.5
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 8.6e-71 272.3 592 32.9
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.1e-70 271.9 594 33.3
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.1e-70 271.9 585 33.3
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 1.9e-70 271.2 588 32.5
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 1.9e-70 271.2 594 33.3
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.5e-70 270.8 596 33.6
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.5e-70 270.8 587 33.6
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 3.3e-70 270.4 589 32.3
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 3.3e-70 270.4 595 32.9
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 3.3e-70 270.4 604 33.9
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 3.3e-70 270.4 587 33.7
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 7.3e-70 269.2 587 33.6
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 7.3e-70 269.2 585 34.9
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 7.3e-70 269.2 591 33.7
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 7.3e-70 269.2 595 33.1
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 7.3e-70 269.2 595 33.1
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 9.6e-70 268.9 593 32.0
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 9.6e-70 268.9 593 32.7
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 1.2e-69 268.5 584 32.7
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.2e-69 268.5 581 33.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.6e-69 268.1 582 32.5
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.1e-69 267.7 597 32.3
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 2.1e-69 267.7 587 33.2
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 2.8e-69 267.3 586 33.1
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 2.8e-69 267.3 585 34.2
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 4.7e-69 266.5 590 31.4
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 4.7e-69 266.5 584 32.9
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 4.7e-69 266.5 595 32.4
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 6.2e-69 266.2 594 32.7
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 8.1e-69 265.8 597 32.8
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.1e-68 265.4 579 33.0
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 1.1e-68 265.4 582 32.3
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.8e-68 264.6 566 32.9
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.8e-68 264.6 578 32.5
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 1.8e-68 264.6 587 32.7
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 2.4e-68 264.2 593 32.4
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 3.1e-68 263.8 584 31.5
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 3.1e-68 263.8 585 33.3
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 4.0e-68 263.5 593 33.2
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 4.0e-68 263.5 587 32.5
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 8.9e-68 262.3 611 32.9
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.2e-67 261.9 606 30.7
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 1.5e-67 261.5 593 32.4
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 2.0e-67 261.2 553 34.7
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 2.6e-67 260.8 597 33.3
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 3.4e-67 260.4 583 32.9
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 5.8e-67 259.6 555 33.9
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 5.8e-67 259.6 557 32.9
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 9.9e-67 258.8 592 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 1.3e-66 258.5 583 34.5
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 1.3e-66 258.5 607 32.1
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 2.2e-66 257.7 593 32.2
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 2.9e-66 257.3 596 32.6
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 2.9e-66 257.3 585 33.0
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 3.8e-66 256.9 626 32.1
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 3.8e-66 256.9 538 32.9
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 4.9e-66 256.5 592 31.9
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 8.4e-66 255.8 598 32.1
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 1.4e-65 255.0 596 32.2
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 1.9e-65 254.6 593 31.7
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 9.3e-65 252.3 613 32.0
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 1.6e-64 251.5 580 32.1
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.5e-64 250.4 548 32.7
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 6.0e-64 249.6 585 32.3
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.7e-63 248.1 594 32.3
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.9e-63 246.9 625 31.5
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 5.1e-63 246.5 643 32.2
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 8.7e-63 245.7 551 33.0
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 2.5e-62 244.2 584 32.0
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 4.3e-62 243.4 482 34.0
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 1.3e-61 241.9 603 30.2
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 8.1e-61 239.2 601 30.1
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 1.4e-60 238.4 601 30.1
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 1.8e-60 238.0 586 32.1
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 9.9e-59 232.3 615 30.1
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 1.3e-58 231.9 492 33.5
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 3.8e-58 230.3 543 32.4
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.4e-57 228.4 599 30.7
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.4e-57 228.4 593 30.2
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 3.2e-57 227.3 569 31.1
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 9.3e-57 225.7 602 29.4
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.2e-56 225.3 544 31.1
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 1.6e-56 224.9 591 31.0
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 3.9e-55 220.3 714 27.6
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 1.3e-53 215.3 519 31.6
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 1.5e-51 208.4 568 31.7
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 2.0e-51 208.0 502 30.9
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 1.2e-48 198.7 549 29.9
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 6.7e-47 193.0 320 37.5
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 8.7e-47 192.6 316 37.7
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 1.1e-46 192.2 325 37.2
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 4.5e-43 180.3 490 29.0
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 1.9e-41 174.9 354 33.3
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 4.6e-40 170.2 297 38.0
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 9.6e-38 162.5 228 42.1
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 1.3e-37 162.2 326 35.6
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 3.4e-35 154.1 214 43.5
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 4.5e-35 153.7 320 34.4
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 1.3e-31 142.1 252 34.9
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 6.3e-29 133.3 284 34.5
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 2.4e-28 131.3 169 45.6
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 6.9e-28 129.8 171 47.4
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.6e-27 127.9 157 48.4
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 6.5e-26 123.2 161 46.0
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 4.2e-25 120.6 153 47.1
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 4.2e-25 120.6 153 47.1
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 4.3e-22 110.5 112 52.7
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 6.3e-21 106.7 316 29.1
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 1.7e-18 98.6 212 31.6
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 1.1e-17 95.9 188 34.0
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.1e-17 95.9 213 31.5
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 9.4e-17 92.8 223 30.5
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.6e-16 92.0 211 31.8
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 1.0e-15 89.4 238 30.7
QL10p037250 Quercus lobata HOM05D003579 ORTHO05D004266 5.1e-15 87.0 110 44.5
AUR62038598 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.1e-14 85.9 109 43.1
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 2.0e-14 85.1 213 27.7
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 4.1e-12 77.4 183 29.5
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 3.8e-10 70.9 167 28.1
Eucgr.E02122 Eucalyptus grandis HOM05D003579 ORTHO05D004266 8.0e-08 63.2 49 59.2
Psat7g138600 Pisum sativum HOM05D003579 ORTHO05D016333 1.5e-06 58.9 78 43.6


User provided reference genes

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