Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 0.0e+00 1609.3 837 100.0
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 2.3e-61 241.5 695 28.5
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 6.7e-61 240.0 689 27.1
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.7e-61 240.0 689 27.1
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.7e-61 240.0 689 27.1
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.0e-60 238.4 689 28.3
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.6e-60 238.0 689 27.0
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 2.6e-60 238.0 689 27.3
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 5.7e-60 236.9 699 27.8
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 7.4e-60 236.5 685 26.7
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 1.7e-59 235.3 621 28.3
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.7e-59 235.3 689 28.3
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 2.2e-59 235.0 688 28.1
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 2.8e-59 234.6 693 27.6
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 3.7e-59 234.2 676 28.7
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 6.3e-59 233.4 694 27.8
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 8.2e-59 233.0 689 26.6
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 1.1e-58 232.6 685 27.2
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.1e-58 232.6 686 27.0
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.4e-58 232.3 689 28.0
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 1.4e-58 232.3 689 27.9
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 2.4e-58 231.5 693 28.3
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 3.1e-58 231.1 684 27.3
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 3.1e-58 231.1 685 28.0
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 3.1e-58 231.1 685 27.9
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 3.1e-58 231.1 685 27.7
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 3.1e-58 231.1 588 29.4
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 3.1e-58 231.1 588 28.2
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 4.1e-58 230.7 685 27.3
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 4.1e-58 230.7 685 27.7
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 5.3e-58 230.3 612 28.1
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 5.3e-58 230.3 685 27.3
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 5.3e-58 230.3 693 28.0
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 7.0e-58 229.9 690 28.1
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 7.0e-58 229.9 620 28.2
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 7.0e-58 229.9 620 27.1
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 7.0e-58 229.9 689 26.9
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 9.1e-58 229.6 681 27.0
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 9.1e-58 229.6 694 27.4
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.2e-57 229.2 698 27.4
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.2e-57 229.2 694 27.4
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 1.2e-57 229.2 682 26.8
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 2.0e-57 228.4 676 26.2
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.6e-57 228.0 684 27.2
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 3.5e-57 227.6 685 27.3
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 5.9e-57 226.9 685 27.4
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 7.7e-57 226.5 685 27.4
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 7.7e-57 226.5 685 27.0
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 7.7e-57 226.5 685 26.6
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 1.0e-56 226.1 684 27.6
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 1.0e-56 226.1 690 27.0
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.7e-56 225.3 684 26.9
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 1.7e-56 225.3 681 26.7
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.7e-56 225.3 685 27.0
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.7e-56 225.3 634 27.1
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 2.2e-56 224.9 687 26.6
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 2.2e-56 224.9 685 26.6
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 2.9e-56 224.6 611 28.2
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 3.8e-56 224.2 698 25.2
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 3.8e-56 224.2 621 27.5
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 3.8e-56 224.2 685 26.6
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 5.0e-56 223.8 621 27.2
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 5.0e-56 223.8 685 27.2
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 6.5e-56 223.4 684 26.6
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 6.5e-56 223.4 685 26.1
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 6.5e-56 223.4 685 26.1
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 8.5e-56 223.0 622 27.0
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 8.5e-56 223.0 696 26.4
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 1.4e-55 222.2 689 26.4
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 1.4e-55 222.2 622 27.0
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 1.9e-55 221.9 686 26.2
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 2.5e-55 221.5 675 27.4
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 2.5e-55 221.5 673 26.0
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 3.2e-55 221.1 643 27.2
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 3.2e-55 221.1 698 25.4
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 5.5e-55 220.3 627 26.3
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 5.5e-55 220.3 685 26.3
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 9.4e-55 219.5 690 26.4
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 9.4e-55 219.5 623 27.0
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 1.2e-54 219.2 698 26.2
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.6e-54 218.8 674 26.9
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.6e-54 218.8 689 26.4
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 3.6e-54 217.6 659 26.7
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 3.6e-54 217.6 626 27.2
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 3.6e-54 217.6 626 27.2
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 2.3e-53 214.9 698 26.6
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 5.2e-53 213.8 707 26.7
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 1.5e-52 212.2 635 26.6
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 1.5e-52 212.2 635 26.6
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.2e-51 208.4 685 26.1
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 6.3e-51 206.8 593 26.8
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 1.8e-50 205.3 620 26.6
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 9.1e-50 203.0 621 27.1
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 9.1e-50 203.0 589 29.0
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 3.5e-49 201.1 621 26.2
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 1.7e-48 198.7 605 26.9
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 3.8e-48 197.6 676 25.6
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 5.0e-48 197.2 681 25.8
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 8.5e-48 196.4 737 25.0
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 2.1e-46 191.8 625 25.3
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 8.0e-46 189.9 665 26.3
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 1.8e-45 188.7 638 24.3
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 4.0e-45 187.6 672 25.6
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 5.2e-45 187.2 555 26.8
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 5.2e-45 187.2 647 25.2
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 6.8e-45 186.8 788 24.7
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 1.5e-44 185.7 683 23.7
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 2.0e-44 185.3 685 23.9
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 9.7e-44 183.0 686 24.5
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 2.8e-43 181.4 681 26.6
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 4.8e-43 180.6 613 26.6
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 4.8e-43 180.6 763 25.0
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 7.0e-42 176.8 634 26.2
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 3.8e-40 171.0 643 24.4
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 1.9e-39 168.7 681 24.8
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 7.2e-39 166.8 743 23.8
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 8.0e-38 163.3 447 28.9
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 3.1e-34 151.4 500 24.6
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 1.3e-32 146.0 618 23.3
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.5e-31 140.6 321 32.7
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 7.2e-31 140.2 660 24.2
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 1.2e-30 139.4 368 30.2
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 3.6e-30 137.9 373 29.0
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 6.1e-30 137.1 666 22.7
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 1.8e-26 125.6 614 22.6
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 3.5e-25 121.3 668 23.2
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.7e-24 119.0 238 33.6
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 8.6e-24 116.7 297 26.3
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.1e-23 116.3 238 33.6
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.1e-22 110.5 295 30.2
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 4.3e-15 87.8 177 35.6
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 3.7e-11 74.7 237 24.9
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 9.5e-07 60.1 108 38.9
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 2.8e-06 58.5 303 24.1
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 4.7e-06 57.8 103 39.8
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 8.1e-06 57.0 92 43.5


User provided reference genes

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