Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023655 Carpinus fangiana HOM05D000252 ORTHO05D122479 9.9e-161 570.1 291 100.0
Cfa026878 Carpinus fangiana HOM05D000360 ORTHO05D123566 4.3e-15 86.3 330 25.2
AUR62017189 Chenopodium quinoa HOM05D000252 ORTHO05D000307 7.1e-10 68.9 270 27.0
AagrBONN_evm.TU.Sc2ySwM_228.5796 Anthoceros agrestis HOM05D000252 ORTHO05D000307 2.7e-09 67.0 282 25.5
AagrBONN_evm.TU.Sc2ySwM_228.5800 Anthoceros agrestis HOM05D000252 ORTHO05D000307 2.7e-09 67.0 282 25.5
Nitab4.5_0004439g0070 Nicotiana tabacum HOM05D000252 ORTHO05D000307 7.9e-09 65.5 265 25.3
RcHm_v2.0_Chr1g0377861 Rosa chinensis HOM05D000252 ORTHO05D000307 1.0e-08 65.1 297 23.9
Pp3c3_32420 Physcomitrium patens HOM05D000252 ORTHO05D000307 1.8e-08 64.3 275 24.4
Hund11461 Selenicereus undatus HOM05D000252 ORTHO05D000307 1.8e-08 64.3 283 25.4
ECA233G1969 Erigeron canadensis HOM05D000252 ORTHO05D000307 2.3e-08 63.9 300 26.0
Peaxi162Scf00057g00140 Petunia axillaris HOM05D000252 ORTHO05D000307 2.3e-08 63.9 277 24.2
PGSC0003DMG401015792 Solanum tuberosum HOM05D000252 ORTHO05D000307 2.3e-08 63.9 299 24.1
HanXRQChr04g0117791 Helianthus annuus HOM05D000252 ORTHO05D000307 3.9e-08 63.2 301 23.9
Sopen03g004240 Solanum pennellii HOM05D000252 ORTHO05D000307 3.9e-08 63.2 305 23.6
Sopen03g004250 Solanum pennellii HOM05D000252 ORTHO05D000307 3.9e-08 63.2 299 24.1
PGSC0003DMG400015793 Solanum tuberosum HOM05D000252 ORTHO05D000307 3.9e-08 63.2 299 25.4
Lsat_1_v5_gn_6_5620 Lactuca sativa HOM05D000252 ORTHO05D000307 5.1e-08 62.8 298 25.5
Solyc03g025410.4 Solanum lycopersicum HOM05D000252 ORTHO05D000307 5.1e-08 62.8 299 24.1
Sabra03G0104600 Salix brachista HOM05D000252 ORTHO05D000307 6.7e-08 62.4 253 28.5
CSS0043584 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D000307 8.7e-08 62.0 299 25.1
CAN.G1005.6 Capsicum annuum HOM05D000252 ORTHO05D000307 8.7e-08 62.0 299 23.7
DCAR_008378 Daucus carota HOM05D000252 ORTHO05D000307 8.7e-08 62.0 295 25.1
FvH4_7g29900 Fragaria vesca HOM05D000252 ORTHO05D000307 8.7e-08 62.0 294 23.8
Manes.06G150100 Manihot esculenta HOM05D000252 ORTHO05D000307 8.7e-08 62.0 297 25.6
Potri.003G128800 Populus trichocarpa HOM05D000252 ORTHO05D000307 8.7e-08 62.0 304 24.7
FAN10G3674 Fragaria x ananassa HOM05D000252 ORTHO05D000307 1.1e-07 61.6 294 23.8
Os09g0570300 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 1.1e-07 61.6 320 23.4
Sabra03G0091600 Salix brachista HOM05D000252 ORTHO05D000307 1.1e-07 61.6 304 24.3
Lalb_Chr06g0161241 Lupinus albus HOM05D000252 ORTHO05D000307 1.5e-07 61.2 298 23.2
Duzib068G1052 Durio zibethinus HOM05D000252 ORTHO05D000307 1.9e-07 60.8 278 24.5
Potri.003G144100 Populus trichocarpa HOM05D000252 ORTHO05D000307 1.9e-07 60.8 296 27.7
Aa31LG6G6620 Aethionema arabicum HOM05D000252 ORTHO05D000307 2.5e-07 60.5 298 23.8
Cre09.g398252 Chlamydomonas reinhardtii HOM05D000252 ORTHO05D000307 2.5e-07 60.5 319 26.6
Lj5g0009064 Lotus japonicus HOM05D000252 ORTHO05D000307 2.5e-07 60.5 299 23.1
Cpa.g.sc107.80 Carica papaya HOM05D000252 ORTHO05D000307 3.3e-07 60.1 308 23.1
Manes.14G024400 Manihot esculenta HOM05D000252 ORTHO05D000307 3.3e-07 60.1 299 23.7
PSO782G5092 Papaver somniferum HOM05D000252 ORTHO05D003750 3.3e-07 60.1 269 26.8
Pp3c4_6480 Physcomitrium patens HOM05D000252 ORTHO05D000307 3.3e-07 60.1 298 24.2
Rhsim03G0188500 Rhododendron simsii HOM05D000252 ORTHO05D000307 3.3e-07 60.1 305 23.3
Sed0011878 Sechium edule HOM05D000252 ORTHO05D000307 3.3e-07 60.1 300 23.3
Hund04770 Selenicereus undatus HOM05D000252 ORTHO05D000307 3.3e-07 60.1 291 25.1
Solyc03g025370.3 Solanum lycopersicum HOM05D000252 ORTHO05D000307 3.3e-07 60.1 297 24.9
MSTRG.4321 Avicennia marina HOM05D000252 ORTHO05D003750 4.3e-07 59.7 289 24.2
Lalb_Chr02g0141161 Lupinus albus HOM05D000252 ORTHO05D000307 4.3e-07 59.7 306 24.2
Aa31LG2G1590 Aethionema arabicum HOM05D000252 ORTHO05D000307 5.7e-07 59.3 314 26.4
CARHR046330 Cardamine hirsuta HOM05D000252 ORTHO05D000307 5.7e-07 59.3 320 25.9
Cc02_g02640 Coffea canephora HOM05D000252 ORTHO05D000307 5.7e-07 59.3 293 24.9
Migut.D02061 Erythranthe guttata HOM05D000252 ORTHO05D003750 5.7e-07 59.3 289 24.6
Hma1.2p1_0227F.1_g095940 Hydrangea macrophylla HOM05D000252 ORTHO05D000307 5.7e-07 59.3 294 24.1
Lsat_1_v5_gn_8_7281 Lactuca sativa HOM05D000252 ORTHO05D000307 5.7e-07 59.3 292 24.0
PGSC0003DMG400012336 Solanum tuberosum HOM05D000252 ORTHO05D000307 5.7e-07 59.3 223 23.8
Potri.012G143800 Populus trichocarpa HOM05D000252 ORTHO05D000307 7.4e-07 58.9 292 24.7
Cfa023208 Carpinus fangiana HOM05D000252 ORTHO05D000307 9.6e-07 58.5 312 22.8
Nitab4.5_0007038g0030 Nicotiana tabacum HOM05D000252 ORTHO05D000307 9.6e-07 58.5 264 24.2
Rhsim02G0249000 Rhododendron simsii HOM05D000252 ORTHO05D000307 9.6e-07 58.5 293 26.6
SMO195G0005 Selaginella moellendorffii HOM05D000252 ORTHO05D000307 9.6e-07 58.5 311 24.8
TAR636G2349 Trochodendron aralioides HOM05D000252 ORTHO05D000307 9.6e-07 58.5 199 29.6
vmacro11523 Vaccinium macrocarpon HOM05D000252 ORTHO05D000307 9.6e-07 58.5 315 25.7
BcaC04g22585 Brassica carinata HOM05D000252 ORTHO05D000307 1.3e-06 58.2 319 26.3
BcaC04g22586 Brassica carinata HOM05D000252 ORTHO05D000307 1.3e-06 58.2 319 26.3
BcaC04g22587 Brassica carinata HOM05D000252 ORTHO05D000307 1.3e-06 58.2 319 26.3
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.3e-06 58.2 319 26.3
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.3e-06 58.2 319 26.3
HanXRQChr10g0304191 Helianthus annuus HOM05D000252 ORTHO05D000307 1.3e-06 58.2 301 24.6
PSO063G3479 Papaver somniferum HOM05D000252 ORTHO05D003750 1.3e-06 58.2 269 26.4
Pp3c11_570 Physcomitrium patens HOM05D000252 ORTHO05D003750 1.3e-06 58.2 284 24.6
PGR031G1224 Punica granatum HOM05D000252 ORTHO05D000307 1.3e-06 58.2 293 22.9
Solyc03g025390.3 Solanum lycopersicum HOM05D000252 ORTHO05D000307 1.3e-06 58.2 299 23.4
Sopen03g004230 Solanum pennellii HOM05D000252 ORTHO05D000307 1.3e-06 58.2 299 23.7
Zm00001eb420380 Zea mays HOM05D000252 ORTHO05D000307 1.3e-06 58.2 263 28.1
BcaB07g31477 Brassica carinata HOM05D000252 ORTHO05D000307 1.6e-06 57.8 320 26.2
CARHR230760 Cardamine hirsuta HOM05D000252 ORTHO05D000307 1.6e-06 57.8 282 23.4
CsaV3_5G001200 Cucumis sativus L. HOM05D000252 ORTHO05D000307 1.6e-06 57.8 303 22.8
Lj1C1001T8 Lonicera japonica HOM05D000252 ORTHO05D000307 1.6e-06 57.8 293 24.6
Lalb_Chr24g0398501 Lupinus albus HOM05D000252 ORTHO05D003750 1.6e-06 57.8 321 25.5
Medtr1g100305 Medicago truncatula HOM05D000252 ORTHO05D000307 1.6e-06 57.8 307 24.4
Psat6g193560 Pisum sativum HOM05D000252 ORTHO05D000307 1.6e-06 57.8 308 23.7
PGR042G1262 Punica granatum HOM05D000252 ORTHO05D000307 1.6e-06 57.8 299 25.1
Sc13g0008910 Simmondsia chinensis HOM05D000252 ORTHO05D000307 1.6e-06 57.8 290 25.9
TPR.G26998 Trifolium pratense HOM05D000252 ORTHO05D000307 1.6e-06 57.8 314 23.2
AL2G10170 Arabidopsis lyrata HOM05D000252 ORTHO05D000307 2.1e-06 57.4 299 26.4
arahy.Tifrunner.gnm1.ann1.XU9J8D Arachis hypogaea HOM05D000252 ORTHO05D000307 2.1e-06 57.4 299 23.7
A08p16140 Brassica napus HOM05D000252 ORTHO05D000307 2.1e-06 57.4 294 24.1
CANSAT21G0031 Cannabis sativa HOM05D000252 ORTHO05D000307 2.1e-06 57.4 293 24.2
AUR62041647 Chenopodium quinoa HOM05D000252 ORTHO05D000307 2.1e-06 57.4 300 25.0
Thhalv10025732m.g Eutrema salsugineum HOM05D000252 ORTHO05D000307 2.1e-06 57.4 282 23.4
Glyma.09G166100 Glycine max HOM05D000252 ORTHO05D003750 2.1e-06 57.4 268 25.0
HanXRQChr05g0137661 Helianthus annuus HOM05D000252 ORTHO05D000307 2.1e-06 57.4 297 23.6
MD04G1123600 Malus domestica HOM05D000252 ORTHO05D000307 2.1e-06 57.4 260 23.8
BraA08t33584Z Brassica rapa HOM05D000252 ORTHO05D000307 2.8e-06 57.0 294 23.8
Cc08_g14860 Coffea canephora HOM05D000252 ORTHO05D000307 2.8e-06 57.0 302 22.5
MELO3C005827.2 Cucumis melo HOM05D000252 ORTHO05D000307 2.8e-06 57.0 303 22.8
FAN13G0445 Fragaria x ananassa HOM05D000252 ORTHO05D000307 2.8e-06 57.0 295 23.7
Pp3c25_9400 Physcomitrium patens HOM05D000252 ORTHO05D000307 2.8e-06 57.0 283 24.7
Sp2g00140 Schrenkiella parvula HOM05D000252 ORTHO05D000307 2.8e-06 57.0 276 27.5
Solyc08g081200.3 Solanum lycopersicum HOM05D000252 ORTHO05D000307 2.8e-06 57.0 217 24.0
AT1G64590 Arabidopsis thaliana HOM05D000252 ORTHO05D000307 3.7e-06 56.6 300 27.0
AT4G23420 Arabidopsis thaliana HOM05D000252 ORTHO05D000307 3.7e-06 56.6 276 23.9
C03p84670 Brassica napus HOM05D000252 ORTHO05D000307 3.7e-06 56.6 294 23.8
BolC3t20754H Brassica oleracea HOM05D000252 ORTHO05D000307 3.7e-06 56.6 294 23.8
CAN.G929.31 Capsicum annuum HOM05D000252 ORTHO05D003750 3.7e-06 56.6 269 26.8
Glyma.16G216200 Glycine max HOM05D000252 ORTHO05D003750 3.7e-06 56.6 268 24.3
Manes.01G059700 Manihot esculenta HOM05D000252 ORTHO05D000307 3.7e-06 56.6 303 24.4
Manes.06G150200 Manihot esculenta HOM05D000252 ORTHO05D000307 3.7e-06 56.6 303 23.1
Medtr6g081020 Medicago truncatula HOM05D000252 ORTHO05D003750 3.7e-06 56.6 318 23.0
PSO782G3605 Papaver somniferum HOM05D000252 ORTHO05D000307 3.7e-06 56.6 297 24.6
TWI14G0784 Tripterygium wilfordii HOM05D000252 ORTHO05D000307 3.7e-06 56.6 295 25.8
TWI75G1562 Tripterygium wilfordii HOM05D000252 ORTHO05D000307 3.7e-06 56.6 299 23.7
GSVIVG01028898001 Vitis vinifera HOM05D000252 ORTHO05D000307 3.7e-06 56.6 293 24.2
Actinidia34136 Actinidia chinensis HOM05D000252 ORTHO05D000307 4.8e-06 56.2 305 22.6
Cpa.g.sc74.4 Carica papaya HOM05D000252 ORTHO05D000307 4.8e-06 56.2 296 22.6
Ciclev10005473m.g Citrus clementina HOM05D000252 ORTHO05D000307 4.8e-06 56.2 273 24.2
Ciclev10021041m.g Citrus clementina HOM05D000252 ORTHO05D000307 4.8e-06 56.2 277 27.4
Thhalv10013865m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 4.8e-06 56.2 318 25.2
Lj8A21T39 Lonicera japonica HOM05D000252 ORTHO05D000307 4.8e-06 56.2 218 26.6
Os10g0547900 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 4.8e-06 56.2 300 24.3
Pp3c21_9830 Physcomitrium patens HOM05D000252 ORTHO05D000307 4.8e-06 56.2 309 25.9
PGR031G2988 Punica granatum HOM05D000252 ORTHO05D000307 4.8e-06 56.2 299 22.7
PGR042G1419 Punica granatum HOM05D000252 ORTHO05D000307 4.8e-06 56.2 259 25.5
Sp7g21330 Schrenkiella parvula HOM05D000252 ORTHO05D000307 4.8e-06 56.2 282 23.4
PGSC0003DMG402015792 Solanum tuberosum HOM05D000252 ORTHO05D000307 4.8e-06 56.2 297 23.2
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 4.8e-06 56.2 289 24.9
ATR0680G311 Amborella trichopoda HOM05D000252 ORTHO05D000307 6.2e-06 55.8 305 23.3
AL7G30030 Arabidopsis lyrata HOM05D000252 ORTHO05D000307 6.2e-06 55.8 282 23.4
BcaC03g14457 Brassica carinata HOM05D000252 ORTHO05D003750 6.2e-06 55.8 271 25.8
BcaNung00972 Brassica carinata HOM05D000252 ORTHO05D000307 6.2e-06 55.8 282 23.4
BolC2t08013H Brassica oleracea HOM05D000252 ORTHO05D003750 6.2e-06 55.8 273 26.0
CAN.G1005.15 Capsicum annuum HOM05D000252 ORTHO05D000307 6.2e-06 55.8 303 23.4
CAN.G567.66 Capsicum annuum HOM05D000252 ORTHO05D000307 6.2e-06 55.8 289 26.0
AUR62019889 Chenopodium quinoa HOM05D000252 ORTHO05D000307 6.2e-06 55.8 322 25.8
Thhalv10023562m.g Eutrema salsugineum HOM05D000252 ORTHO05D000307 6.2e-06 55.8 311 25.7
Gohir.A09G050400 Gossypium hirsutum HOM05D000252 ORTHO05D000307 6.2e-06 55.8 279 23.3
Gohir.D09G042900 Gossypium hirsutum HOM05D000252 ORTHO05D000307 6.2e-06 55.8 293 23.2
HanXRQChr06g0165901 Helianthus annuus HOM05D000252 ORTHO05D000307 6.2e-06 55.8 286 23.1
Nitab4.5_0000782g0210 Nicotiana tabacum HOM05D000252 ORTHO05D003750 6.2e-06 55.8 269 25.7
Os06g0129100 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D000307 6.2e-06 55.8 324 27.2
Peaxi162Scf00444g00318 Petunia axillaris HOM05D000252 ORTHO05D000307 6.2e-06 55.8 213 25.4
QL09p013692 Quercus lobata HOM05D000252 ORTHO05D000307 6.2e-06 55.8 297 24.2
Sabra01G0063200 Salix brachista HOM05D000252 ORTHO05D000307 6.2e-06 55.8 283 26.9
Zm00001eb022870 Zea mays HOM05D000252 ORTHO05D000307 6.2e-06 55.8 308 24.7
BcaC09g51002 Brassica carinata HOM05D000252 ORTHO05D000307 8.2e-06 55.5 282 23.4
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 8.2e-06 55.5 319 26.0
C01p18130 Brassica napus HOM05D000252 ORTHO05D000307 8.2e-06 55.5 282 23.4
BolC1t01740H Brassica oleracea HOM05D000252 ORTHO05D000307 8.2e-06 55.5 282 23.4
CANSAT01G0059 Cannabis sativa HOM05D000252 ORTHO05D000307 8.2e-06 55.5 284 25.0
Carub.0002s0015 Capsella rubella HOM05D000252 ORTHO05D000307 8.2e-06 55.5 300 27.3
HanXRQChr05g0141191 Helianthus annuus HOM05D000252 ORTHO05D000307 8.2e-06 55.5 218 26.1
Lalb_Chr14g0370331 Lupinus albus HOM05D000252 ORTHO05D003750 8.2e-06 55.5 268 24.6
PSO423G0273 Papaver somniferum HOM05D000252 ORTHO05D000307 8.2e-06 55.5 223 25.1
Prupe.5G101600 Prunus persica HOM05D000252 ORTHO05D000307 8.2e-06 55.5 248 25.0
Hund11365 Selenicereus undatus HOM05D000252 ORTHO05D000307 8.2e-06 55.5 288 25.3
GSVIVG01019612001 Vitis vinifera HOM05D000252 ORTHO05D000307 8.2e-06 55.5 237 28.7


User provided reference genes

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