Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 0.0e+00 1092.8 540 100.0
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 8.5e-142 508.1 538 51.9
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 9.4e-141 504.6 539 51.6
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 9.4e-141 504.6 538 50.9
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.2e-140 504.2 537 51.8
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.2e-140 504.2 536 51.9
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 1.6e-140 503.8 541 51.8
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.7e-140 503.1 536 51.9
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 4.7e-140 502.3 534 52.2
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 6.1e-140 501.9 536 51.1
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 6.1e-140 501.9 543 50.8
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 6.1e-140 501.9 537 51.6
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 8.0e-140 501.5 545 50.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 1.4e-139 500.7 537 51.4
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.4e-139 500.7 536 51.5
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.8e-139 500.4 541 51.4
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.3e-139 500.0 537 51.0
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 3.0e-139 499.6 535 50.8
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 3.0e-139 499.6 537 50.7
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 4.0e-139 499.2 541 51.2
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 4.0e-139 499.2 546 50.7
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 5.2e-139 498.8 535 51.2
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 6.8e-139 498.4 537 51.4
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 6.8e-139 498.4 541 51.2
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 6.8e-139 498.4 545 50.1
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 8.8e-139 498.0 546 50.5
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 2.0e-138 496.9 536 50.7
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.4e-138 496.1 535 50.8
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.4e-138 496.1 543 50.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.4e-138 495.7 536 51.3
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 5.7e-138 495.4 543 50.1
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 7.5e-138 495.0 540 50.9
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 7.5e-138 495.0 540 50.9
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.5e-138 495.0 539 50.8
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 9.8e-138 494.6 537 50.7
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.7e-137 493.8 538 50.7
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.2e-137 493.4 536 50.4
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 2.8e-137 493.0 538 51.1
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.8e-137 493.0 534 49.4
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 3.7e-137 492.7 538 51.1
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.7e-137 492.7 545 50.3
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 3.7e-137 492.7 538 50.7
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 4.8e-137 492.3 536 50.6
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 4.8e-137 492.3 536 50.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 4.8e-137 492.3 536 50.2
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 6.3e-137 491.9 535 50.8
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 6.3e-137 491.9 536 50.6
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.1e-136 491.1 536 50.0
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.1e-136 491.1 539 49.7
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.4e-136 490.7 535 50.5
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.8e-136 490.3 538 50.7
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.8e-136 490.3 536 50.4
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 2.4e-136 490.0 538 51.1
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.4e-136 490.0 536 50.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 2.4e-136 490.0 536 50.2
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.4e-136 490.0 552 49.6
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 3.1e-136 489.6 537 50.7
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 4.1e-136 489.2 550 48.2
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 5.4e-136 488.8 536 50.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 5.4e-136 488.8 536 50.4
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 7.0e-136 488.4 536 50.2
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 7.0e-136 488.4 544 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 9.1e-136 488.0 538 49.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.2e-135 487.6 539 49.7
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 1.2e-135 487.6 537 50.7
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.2e-135 487.6 536 50.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.6e-135 487.3 537 50.8
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.6e-135 487.3 548 48.9
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.6e-135 487.3 535 49.7
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.6e-135 487.3 539 49.5
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 2.0e-135 486.9 541 50.3
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 3.5e-135 486.1 537 49.9
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.5e-135 486.1 536 49.8
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 3.5e-135 486.1 544 49.8
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.5e-135 485.7 537 50.5
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 4.5e-135 485.7 542 50.2
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 5.9e-135 485.3 536 49.8
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.9e-135 485.3 537 50.5
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 7.7e-135 485.0 537 50.5
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 1.3e-134 484.2 538 49.6
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.3e-134 484.2 536 50.0
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.7e-134 483.8 537 50.5
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.7e-134 483.8 537 49.2
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 1.7e-134 483.8 550 48.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.7e-134 483.8 544 49.6
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 2.3e-134 483.4 539 49.5
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.3e-134 483.4 537 49.7
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.3e-134 483.4 537 49.3
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.3e-134 483.4 538 50.6
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.9e-134 483.0 536 49.8
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 2.9e-134 483.0 537 49.7
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.9e-134 483.0 545 50.1
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 5.0e-134 482.3 544 49.4
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 8.6e-134 481.5 548 49.8
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 8.6e-134 481.5 556 48.9
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 8.6e-134 481.5 537 49.7
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.9e-133 480.3 538 49.8
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 2.5e-133 479.9 544 49.6
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 4.2e-133 479.2 547 48.6
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 4.2e-133 479.2 547 48.6
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 4.2e-133 479.2 536 49.1
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 7.2e-133 478.4 557 48.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.5e-133 478.0 544 49.8
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 9.5e-133 478.0 537 49.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 9.5e-133 478.0 541 49.2
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.2e-132 477.6 536 50.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 4.7e-132 475.7 536 49.4
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.4e-131 474.2 550 48.2
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.5e-130 470.7 537 48.8
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.5e-130 470.7 537 47.7
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.0e-130 470.3 537 48.2
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.3e-129 467.6 541 47.5
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.3e-129 467.6 535 49.0
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.4e-128 464.2 559 47.2
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.8e-128 463.8 537 48.2
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 5.4e-128 462.2 534 47.6
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 2.5e-125 453.4 495 50.7
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 4.4e-122 442.6 534 47.2
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 4.4e-122 442.6 538 46.5
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.0e-120 435.3 493 47.9
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 7.0e-120 435.3 681 40.2
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.2e-119 434.5 505 48.7
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.9e-112 410.6 666 39.8
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.7e-110 404.1 412 51.2
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 3.2e-104 383.3 443 48.8
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 9.2e-104 381.7 373 55.8
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.1e-103 380.6 533 42.6
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 2.5e-101 373.6 501 42.3
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.6e-92 343.2 411 46.5
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.4e-91 340.5 493 42.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 8.7e-78 295.4 533 37.3
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 1.9e-72 277.7 319 50.2
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 4.0e-67 260.0 697 32.4
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.3e-62 244.2 298 42.3
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 5.3e-51 206.5 421 34.9
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 3.2e-48 197.2 267 45.7
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 9.1e-35 152.5 153 54.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.0e-30 139.0 183 38.8
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.2e-30 136.7 136 51.5
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.4e-21 107.1 180 35.6
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.3e-20 102.8 89 58.4
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.2e-15 89.0 113 44.2
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.2e-13 82.4 90 48.9
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.2e-13 82.4 128 33.6
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 3.7e-12 77.4 197 32.0
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 8.3e-12 76.3 197 32.0
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 3.5e-10 70.9 196 31.1
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 4.5e-10 70.5 92 51.1
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 5.9e-10 70.1 193 29.5
TPR.G34556 Trifolium pratense HOM05D003983 ORTHO05D004562 7.8e-10 69.7 200 28.5
Medtr1g033480 Medicago truncatula HOM05D003983 ORTHO05D004562 1.0e-09 69.3 200 28.5
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 2.3e-09 68.2 196 28.6
Phvul.003G014300 Phaseolus vulgaris HOM05D003983 ORTHO05D004562 3.9e-09 67.4 197 27.4
VMungo1215G1104 Vigna mungo HOM05D003983 ORTHO05D004562 5.0e-09 67.0 197 27.4
Oeu043947.4 Olea europaea HOM05D004788 ORTHO05D006465 8.6e-09 66.2 146 30.8
Ca_26339_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 1.1e-08 65.9 198 28.3
Lsat_1_v5_gn_4_181581 Lactuca sativa HOM05D004788 ORTHO05D006465 5.6e-08 63.5 140 30.7
Nn4g24498 Nelumbo nucifera HOM05D003983 ORTHO05D004562 7.3e-08 63.2 198 26.8
Glyma.16G058800 Glycine max HOM05D003983 ORTHO05D004562 9.5e-08 62.8 196 27.6
Zm00001eb424380 Zea mays HOM05D003983 ORTHO05D004562 9.5e-08 62.8 196 27.6
Os04g0463500 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 1.2e-07 62.4 198 28.3
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 2.1e-07 61.6 131 35.1
HanXRQChr08g0208591 Helianthus annuus HOM05D004788 ORTHO05D006465 2.8e-07 61.2 123 31.7
Zm00001eb080510 Zea mays HOM05D003983 ORTHO05D004562 2.8e-07 61.2 196 27.0
GSVIVG01016291001 Vitis vinifera HOM05D004788 ORTHO05D006465 4.7e-07 60.5 132 30.3
BcaC02g08128 Brassica carinata HOM05D004788 ORTHO05D006465 6.1e-07 60.1 143 32.2
C04p58070 Brassica napus HOM05D004788 ORTHO05D006465 6.1e-07 60.1 143 32.2
BolC4t27333H Brassica oleracea HOM05D004788 ORTHO05D006465 6.1e-07 60.1 143 32.2
Prupe.2G214500 Prunus persica HOM05D004788 ORTHO05D006465 1.4e-06 58.9 160 28.8
GSVIVG01016290001 Vitis vinifera HOM05D004788 ORTHO05D006465 1.4e-06 58.9 153 27.5
MD07G1175300 Malus domestica HOM05D004788 ORTHO05D006465 1.8e-06 58.5 252 25.4
FvH4_7g19690 Fragaria vesca HOM05D004788 ORTHO05D006465 2.3e-06 58.2 253 25.7
FAN10G0980 Fragaria x ananassa HOM05D004788 ORTHO05D006465 3.1e-06 57.8 266 25.2
FAN01G2387 Fragaria x ananassa HOM05D004788 ORTHO05D006465 4.0e-06 57.4 266 25.2
QL08p056120 Quercus lobata HOM05D004788 ORTHO05D006465 4.0e-06 57.4 272 25.7
Solyc04g049360.3 Solanum lycopersicum HOM05D004788 ORTHO05D006465 4.0e-06 57.4 255 25.5
Sopen04g019320 Solanum pennellii HOM05D004788 ORTHO05D006465 4.0e-06 57.4 255 25.5
FAN10G0780 Fragaria x ananassa HOM05D004788 ORTHO05D006465 5.2e-06 57.0 266 25.2
Sp4g11690 Schrenkiella parvula HOM05D004788 ORTHO05D006465 5.2e-06 57.0 158 28.5
MD01G1109300 Malus domestica HOM05D004788 ORTHO05D006465 6.8e-06 56.6 258 24.4
PSO063G3786 Papaver somniferum HOM05D004788 ORTHO05D006465 6.8e-06 56.6 143 28.0
PSO170G4427 Papaver somniferum HOM05D004788 ORTHO05D006465 6.8e-06 56.6 143 28.0
RcHm_v2.0_Chr1g0363521 Rosa chinensis HOM05D004788 ORTHO05D006465 6.8e-06 56.6 258 24.8
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 6.8e-06 56.6 86 40.7


User provided reference genes

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