Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.0e-269 932.9 501 100.0
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.2e-237 825.5 506 86.4
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 5.0e-237 824.3 490 88.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.4e-231 806.2 501 85.8
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 4.7e-227 791.2 502 83.5
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 6.8e-226 787.3 501 82.8
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.3e-224 780.8 501 82.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 8.3e-224 780.4 500 83.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 7.7e-222 773.9 501 81.4
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 6.1e-219 764.2 503 79.7
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.3e-218 762.3 521 78.7
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 9.8e-217 756.9 498 81.5
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.2e-216 755.7 497 81.7
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.8e-216 755.4 497 81.7
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-216 755.0 531 76.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 8.3e-216 753.8 503 78.7
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.4e-215 752.3 501 78.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.2e-214 750.0 502 79.5
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-214 749.2 510 78.8
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 3.5e-214 748.4 500 79.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 5.0e-213 744.6 497 81.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.1e-211 739.2 501 79.4
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-210 736.9 504 79.4
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.0e-210 735.3 505 79.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.2e-210 734.6 501 79.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.8e-210 734.2 504 78.8
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-209 733.0 499 78.2
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 4.4e-209 731.5 501 77.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 9.8e-209 730.3 501 77.6
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 9.8e-209 730.3 494 80.0
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 9.8e-209 730.3 500 77.8
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 9.8e-209 730.3 502 79.5
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.3e-208 729.9 503 79.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.7e-208 729.6 494 79.6
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.2e-208 729.2 504 79.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.7e-208 728.4 504 78.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 6.4e-208 727.6 483 81.2
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-207 726.1 504 78.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 4.1e-207 724.9 501 76.2
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 5.4e-207 724.5 498 79.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 9.2e-207 723.8 470 82.3
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.0e-206 722.6 493 78.5
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.5e-206 721.8 499 77.6
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.7e-205 719.5 499 77.4
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.7e-205 719.5 502 77.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.1e-204 716.8 499 76.8
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.5e-204 716.5 502 77.1
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 7.3e-204 714.1 496 76.8
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 7.3e-204 714.1 501 76.6
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 9.5e-204 713.8 501 78.6
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.6e-203 713.0 501 76.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.1e-203 712.6 489 77.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.8e-203 712.2 504 76.4
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.5e-201 706.4 497 76.7
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.5e-201 706.4 526 74.5
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 9.8e-201 703.7 491 77.4
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.3e-200 703.4 501 73.7
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 5.0e-197 691.4 502 72.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.5e-196 689.9 512 74.2
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.3e-196 688.7 502 75.1
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.1e-195 686.0 502 74.3
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.7e-195 684.9 483 76.6
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 6.2e-195 684.5 487 76.6
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 8.1e-195 684.1 494 73.1
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.4e-194 683.3 493 73.8
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.3e-194 682.6 501 73.3
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 4.4e-193 678.3 496 73.6
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-192 676.0 472 79.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.2e-191 672.2 513 70.8
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.1e-191 671.0 523 72.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.6e-190 669.8 441 79.8
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 6.0e-190 667.9 508 71.5
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.3e-189 666.8 503 75.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 9.5e-188 660.6 501 71.7
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.2e-187 660.2 503 71.8
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.1e-186 655.6 494 71.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.2e-186 654.8 500 71.6
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.4e-185 652.1 493 71.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 9.9e-185 650.6 509 70.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.8e-184 648.7 490 71.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 6.4e-184 647.9 509 69.7
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.1e-183 647.1 509 70.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.5e-182 642.1 510 69.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.0e-181 640.6 509 69.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.0e-181 639.0 495 67.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.1e-180 637.1 509 68.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.5e-180 636.7 420 80.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 3.3e-180 635.6 488 69.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.3e-180 635.2 510 69.0
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 4.3e-180 635.2 503 66.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.1e-179 632.9 506 68.8
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.0e-177 626.3 492 69.1
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.1e-175 620.5 503 66.4
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 4.2e-175 618.6 508 68.1
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-174 617.1 486 68.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.2e-174 617.1 486 68.5
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.1e-174 616.3 488 68.4
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 5.1e-173 611.7 509 67.4
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.7e-173 610.9 501 65.5
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 7.3e-172 607.8 472 68.6
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.1e-170 604.0 507 66.5
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.4e-167 593.6 442 74.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.8e-161 571.6 380 80.5
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.3e-160 570.5 533 62.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.9e-158 561.2 492 64.4
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.7e-155 552.4 355 83.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.3e-152 543.9 480 63.5
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.2e-145 520.8 482 59.3
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 8.5e-144 514.6 498 58.6
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.5e-140 503.1 490 60.4
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.8e-139 499.6 455 64.0
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 8.5e-136 488.0 507 58.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 5.1e-133 478.8 402 64.2
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.6e-129 466.5 393 69.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.2e-128 463.4 376 70.7
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.2e-127 459.1 396 63.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.6e-118 429.5 490 55.3
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.6e-113 414.1 253 95.7
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 9.8e-108 394.8 382 60.5
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 9.8e-108 394.8 382 60.5
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.2e-99 367.1 206 86.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 2.4e-98 363.6 425 52.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.6e-89 334.3 509 43.6
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.5e-87 325.1 219 78.5
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.6e-86 324.3 324 53.1
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.3e-83 314.7 481 42.4
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.8e-78 297.0 221 71.0
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.6e-76 290.4 415 41.4
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.9e-64 250.0 203 69.5
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.8e-62 243.8 276 56.5
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.6e-60 237.3 345 42.6
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.8e-54 217.2 401 34.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.9e-52 208.8 164 69.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 9.3e-50 202.2 409 34.5
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.1e-49 201.1 132 78.0
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.3e-43 181.8 91 98.9
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-42 178.7 290 44.1
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-42 178.3 96 90.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.0e-37 159.1 106 67.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.5e-31 141.7 87 79.3
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.5e-28 131.7 145 57.2
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.9e-24 117.1 187 42.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.1e-21 107.5 96 56.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.2e-20 105.5 122 52.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-14 85.1 66 68.2
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.1e-13 80.9 62 62.9
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.1e-13 80.9 62 62.9
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 9.1e-13 79.3 71 63.4
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.9e-11 74.3 62 58.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 7.2e-10 69.7 59 67.8
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 2.3e-08 64.7 96 36.5
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 6.7e-08 63.2 190 33.2
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.3e-06 58.9 50 68.0


User provided reference genes

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