Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.3e-31 138.3 71 100.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.2e-21 105.1 56 94.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.4e-20 102.4 60 86.7
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 4.1e-20 100.9 60 85.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 5.4e-20 100.5 60 85.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 7.0e-20 100.1 56 87.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 9.2e-20 99.8 61 82.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.6e-19 99.0 61 82.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.6e-19 99.0 60 85.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-19 99.0 60 81.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.6e-19 99.0 60 85.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.6e-19 99.0 60 85.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.1e-19 98.6 56 85.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.5e-19 97.8 60 83.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.5e-19 97.8 60 83.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.6e-19 97.4 60 81.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.0e-19 97.1 60 83.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 6.0e-19 97.1 60 81.7
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 7.8e-19 96.7 60 81.7
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 7.8e-19 96.7 60 81.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.8e-19 96.7 60 81.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.8e-19 96.7 60 81.7
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.8e-19 96.7 60 81.7
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.8e-19 96.7 60 81.7
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.0e-18 96.3 60 81.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.3e-18 95.9 56 83.9
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.3e-18 95.9 59 84.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-18 95.9 61 78.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.3e-18 95.9 57 80.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.7e-18 95.5 57 78.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.7e-18 95.5 56 82.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.7e-18 95.5 60 80.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.7e-18 95.5 62 75.8
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.3e-18 95.1 57 82.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.3e-18 95.1 57 82.5
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.3e-18 95.1 56 83.9
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.3e-18 95.1 56 83.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.3e-18 95.1 61 77.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.3e-18 95.1 61 77.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.3e-18 95.1 60 81.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.0e-18 94.7 56 82.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 3.0e-18 94.7 60 80.0
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.0e-18 94.7 60 81.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.9e-18 94.4 56 85.7
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 5.1e-18 94.0 60 80.0
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.1e-18 94.0 56 82.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 5.1e-18 94.0 56 82.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 5.1e-18 94.0 56 83.9
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 5.1e-18 94.0 56 83.9
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.1e-18 94.0 61 77.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.1e-18 94.0 61 75.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 6.6e-18 93.6 61 75.4
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 6.6e-18 93.6 60 80.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.6e-18 93.6 60 80.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.6e-18 93.6 60 80.0
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 8.6e-18 93.2 56 82.1
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 8.6e-18 93.2 56 82.1
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 8.6e-18 93.2 56 82.1
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 8.6e-18 93.2 56 80.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.1e-17 92.8 56 80.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.1e-17 92.8 57 78.9
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-17 92.8 60 78.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-17 92.8 61 73.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.5e-17 92.4 60 78.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.5e-17 92.4 56 82.1
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.5e-17 92.4 60 80.0
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.9e-17 92.0 56 80.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.9e-17 92.0 56 80.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.9e-17 92.0 56 80.4
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.9e-17 92.0 56 80.4
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.9e-17 92.0 60 80.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-17 92.0 56 80.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-17 92.0 56 82.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.5e-17 91.7 60 76.7
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.5e-17 91.7 56 78.6
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-17 91.7 56 82.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.5e-17 91.7 60 76.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.5e-17 91.7 60 80.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.3e-17 91.3 55 85.5
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.3e-17 91.3 56 80.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.3e-17 91.3 60 75.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.3e-17 91.3 60 75.0
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.3e-17 91.3 56 82.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.3e-17 90.9 56 82.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.3e-17 90.9 55 83.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.3e-17 90.9 56 78.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 4.3e-17 90.9 56 82.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 5.6e-17 90.5 55 80.0
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 5.6e-17 90.5 55 80.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.3e-17 90.1 56 80.4
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 7.3e-17 90.1 56 82.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.3e-17 90.1 55 83.6
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 7.3e-17 90.1 56 78.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 9.5e-17 89.7 56 78.6
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.2e-16 89.4 56 82.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-16 89.4 56 80.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.2e-16 89.4 61 75.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-16 89.0 56 78.6
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.1e-16 88.6 60 78.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.1e-16 88.6 56 80.4
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.8e-16 88.2 56 76.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.8e-16 88.2 60 70.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.6e-16 87.8 56 76.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.2e-16 87.0 56 80.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.1e-16 86.7 56 78.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.8e-15 85.5 56 71.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-15 85.5 56 78.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.8e-15 85.5 55 76.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.8e-15 85.5 58 74.1
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.3e-15 85.1 61 67.2
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.2e-15 84.0 55 78.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.2e-15 84.0 57 77.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.8e-15 83.6 56 73.2
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 8.9e-15 83.2 56 76.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.9e-15 83.2 56 75.0
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.2e-14 82.8 56 75.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-14 82.8 56 73.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.2e-14 82.8 56 75.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.2e-14 82.8 55 76.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.0e-14 82.0 56 75.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-14 81.6 56 73.2
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.6e-14 81.6 56 73.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.6e-14 81.6 59 74.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.4e-14 81.3 60 73.3
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 3.4e-14 81.3 56 75.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.4e-14 80.9 56 73.2
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.4e-14 80.9 56 73.2
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.4e-14 80.9 56 73.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.8e-14 80.5 55 76.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 5.8e-14 80.5 56 73.2
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 7.5e-14 80.1 56 69.6
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 7.5e-14 80.1 60 70.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 7.5e-14 80.1 61 70.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.3e-13 79.3 56 76.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.7e-13 79.0 56 71.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-13 79.0 56 73.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.7e-13 79.0 56 71.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.2e-13 78.6 56 69.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.9e-13 78.2 46 87.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 4.9e-13 77.4 56 67.9
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.4e-12 75.9 56 67.9
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-10 68.6 49 79.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.1e-09 66.2 61 57.4
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.3e-09 64.3 56 58.9
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 7.3e-09 63.5 61 54.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-08 62.0 48 64.6


User provided reference genes

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