Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.4e-300 1034.6 501 100.0
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 4.5e-230 801.2 498 78.7
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 6.6e-213 744.2 494 73.9
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.0e-210 736.9 497 75.7
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 9.8e-209 730.3 502 73.5
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 8.3e-208 727.2 479 74.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.2e-207 725.3 490 72.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 4.1e-207 724.9 493 73.4
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 5.4e-207 724.5 496 73.8
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.6e-206 721.5 494 73.7
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.6e-206 721.5 491 75.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.8e-206 720.7 500 73.8
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.3e-205 719.2 491 72.9
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.0e-205 718.8 485 73.6
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.9e-205 718.4 490 72.9
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 3.9e-205 718.4 489 71.6
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 4.3e-204 714.9 486 73.5
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 9.5e-204 713.8 483 74.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 2.8e-203 712.2 488 72.7
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.8e-203 712.2 484 72.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.8e-203 712.2 490 72.2
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 8.0e-203 710.7 490 72.0
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 5.2e-202 708.0 483 73.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.4e-201 704.9 483 73.5
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 5.8e-201 704.5 487 73.7
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 9.8e-201 703.7 501 72.3
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.9e-200 701.4 494 70.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 6.4e-200 701.0 505 71.7
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 8.3e-200 700.7 493 71.4
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 5.4e-199 698.0 488 72.7
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.9e-197 691.8 495 71.1
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.5e-196 689.1 497 69.6
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 2.2e-192 676.0 502 69.5
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.2e-192 676.0 515 67.6
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.9e-192 675.6 524 67.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.4e-191 672.5 490 70.2
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.6e-190 669.8 469 71.0
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.6e-190 669.8 415 81.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.7e-190 669.1 488 69.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 7.8e-190 667.5 483 70.0
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.3e-189 666.8 485 69.1
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 7.3e-188 661.0 477 70.9
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.3e-188 661.0 499 68.3
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.2e-187 660.2 490 68.8
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.2e-187 660.2 488 68.9
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.4e-186 656.8 479 70.4
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.8e-186 656.4 496 68.8
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 6.8e-186 654.4 455 71.6
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 2.9e-184 649.0 484 67.1
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 6.4e-184 647.9 500 68.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 6.4e-184 647.9 489 66.7
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 8.4e-184 647.5 494 67.2
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 2.4e-183 646.0 494 67.4
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 2.4e-183 646.0 494 67.4
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 6.0e-182 641.3 494 66.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.7e-181 639.8 474 67.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 6.6e-181 637.9 495 65.9
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 6.6e-181 637.9 479 68.3
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 8.7e-181 637.5 493 67.1
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.1e-180 637.1 484 66.9
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.6e-179 632.1 491 66.0
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.4e-178 630.2 479 66.8
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 4.0e-178 628.6 474 68.4
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.2e-177 627.1 485 66.6
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.4e-175 619.4 488 64.3
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 7.1e-175 617.8 549 59.9
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 9.3e-175 617.5 496 65.7
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 4.6e-174 615.1 474 65.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 3.0e-173 612.5 468 65.8
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 3.0e-173 612.5 489 63.8
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 3.0e-173 612.5 482 64.5
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 3.9e-173 612.1 500 65.6
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.4e-170 603.6 493 63.5
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 6.9e-170 601.3 497 63.6
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 9.0e-170 600.9 488 62.5
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 9.3e-167 590.9 475 65.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 9.3e-167 590.9 501 61.1
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.6e-163 580.1 486 60.9
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 6.9e-162 574.7 502 62.7
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.8e-161 571.6 490 61.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 3.8e-160 568.9 517 59.4
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 3.5e-158 562.4 498 59.6
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.0e-157 560.8 410 68.8
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 8.2e-155 551.2 486 57.2
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 8.2e-155 551.2 503 58.4
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 5.3e-154 548.5 378 73.5
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.0e-153 546.6 496 58.3
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.5e-151 539.7 478 59.0
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 9.3e-151 537.7 468 60.3
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.8e-149 533.5 557 52.6
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 6.7e-149 531.6 491 57.8
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.5e-148 529.6 517 57.1
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.8e-147 526.2 481 60.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.4e-146 523.9 411 65.0
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 3.0e-141 506.1 850 38.8
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 8.8e-141 504.6 390 66.2
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 8.2e-139 498.0 411 63.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.8e-138 496.9 491 54.2
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.4e-138 496.5 284 83.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.7e-137 491.5 456 58.3
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 6.5e-136 488.4 480 56.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.2e-135 486.1 509 51.7
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.8e-133 480.3 514 56.2
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.8e-131 473.0 540 49.1
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.0e-128 462.2 463 56.6
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.2e-127 459.1 481 51.8
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.9e-125 452.6 517 49.5
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 6.5e-120 435.3 482 51.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 8.5e-120 434.9 268 77.2
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.8e-117 427.2 352 62.2
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.2e-115 420.2 389 59.6
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 4.5e-113 412.5 500 50.0
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.8e-98 364.0 436 51.4
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-96 355.5 636 37.7
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 6.4e-91 339.0 226 67.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 6.0e-89 332.4 351 53.0
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.0e-77 293.1 193 71.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 6.8e-77 292.4 491 37.1
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.3e-71 273.5 265 50.6
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 5.6e-63 246.1 280 43.2
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.5e-60 238.0 401 41.1
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.0e-60 237.7 143 79.0
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.1e-58 231.9 129 84.5
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 5.1e-56 223.0 299 41.1
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.4e-53 214.9 288 40.3
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.1e-50 202.6 113 82.3
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.8e-43 180.3 109 76.1
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.2e-34 150.6 87 79.3
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 1.5e-28 131.7 121 57.9
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 3.3e-23 114.0 60 83.3
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.1e-21 107.5 76 69.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.1e-21 107.5 81 64.2
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 3.0e-16 90.9 66 60.6
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 8.8e-16 89.4 53 81.1
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 2.8e-14 84.3 41 90.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.4e-13 82.0 68 58.8
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 5.5e-10 70.1 90 43.3
Haze_13635 Corylus avellana HOM05D005440 ORTHO05D165560 9.4e-10 69.3 38 97.4
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 2.7e-09 67.8 49 65.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 1.4e-08 65.5 45 68.9
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 6.7e-08 63.2 42 71.4


User provided reference genes

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