Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023482 Carpinus fangiana HOM05D003495 ORTHO05D125175 0.0e+00 4569.2 2359 100.0
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 2.7e-14 86.7 511 22.3
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 7.8e-14 85.1 502 21.1
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 1.7e-13 84.0 491 21.0
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 3.0e-13 83.2 493 20.7
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 3.0e-13 83.2 491 20.8
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 5.1e-13 82.4 502 21.1
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 5.1e-13 82.4 260 25.0
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 6.6e-13 82.0 455 22.2
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 8.6e-13 81.6 486 21.0
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 8.6e-13 81.6 515 21.2
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 8.6e-13 81.6 334 23.1
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 1.1e-12 81.3 376 22.9
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 1.5e-12 80.9 363 23.7
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 1.5e-12 80.9 480 21.2
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 1.9e-12 80.5 324 23.1
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 2.5e-12 80.1 336 23.5
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 4.3e-12 79.3 337 23.4
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 4.3e-12 79.3 504 21.6
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 4.3e-12 79.3 246 26.0
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 5.6e-12 79.0 334 22.8
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 5.6e-12 79.0 363 23.1
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 5.6e-12 79.0 363 23.1
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 5.6e-12 79.0 672 21.7
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 5.6e-12 79.0 499 21.6
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 5.6e-12 79.0 331 23.3
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 7.3e-12 78.6 363 22.6
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 9.5e-12 78.2 332 23.5
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 9.5e-12 78.2 331 23.0
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 9.5e-12 78.2 331 23.0
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 9.5e-12 78.2 555 21.3
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 9.5e-12 78.2 331 22.4
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 9.5e-12 78.2 331 23.0
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 1.2e-11 77.8 332 23.2
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 1.2e-11 77.8 331 23.0
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 1.2e-11 77.8 274 24.5
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 1.2e-11 77.8 334 22.5
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 1.2e-11 77.8 328 22.9
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.2e-11 77.8 334 22.5
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 1.2e-11 77.8 514 20.4
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 2.1e-11 77.0 363 22.9
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 2.1e-11 77.0 334 23.4
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 2.1e-11 77.0 242 23.1
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 2.1e-11 77.0 333 22.8
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.8e-11 76.6 330 23.0
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 2.8e-11 76.6 328 22.6
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 2.8e-11 76.6 513 21.2
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 3.6e-11 76.3 331 22.7
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 4.7e-11 75.9 331 22.1
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 4.7e-11 75.9 333 22.5
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 4.7e-11 75.9 525 20.8
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 4.7e-11 75.9 498 20.9
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 4.7e-11 75.9 334 23.1
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 6.2e-11 75.5 249 23.3
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 6.2e-11 75.5 249 23.3
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 6.2e-11 75.5 335 24.2
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 6.2e-11 75.5 331 22.4
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 8.1e-11 75.1 508 20.7
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 1.4e-10 74.3 249 23.3
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 1.4e-10 74.3 332 22.9
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.4e-10 74.3 331 22.1
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 1.4e-10 74.3 253 23.3
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 1.4e-10 74.3 331 22.4
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 1.8e-10 73.9 492 21.3
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 1.8e-10 73.9 244 24.2
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 1.8e-10 73.9 333 22.8
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 1.8e-10 73.9 512 22.9
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.8e-10 73.9 249 23.3
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.8e-10 73.9 249 23.3
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 1.8e-10 73.9 249 23.3
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 1.8e-10 73.9 338 22.5
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 2.3e-10 73.6 249 22.9
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 3.1e-10 73.2 249 22.9
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 3.1e-10 73.2 507 20.3
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 3.1e-10 73.2 490 21.4
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 4.0e-10 72.8 249 23.3
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 4.0e-10 72.8 331 22.4
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 4.0e-10 72.8 554 20.8
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 4.0e-10 72.8 514 20.6
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 5.2e-10 72.4 249 22.5
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 5.2e-10 72.4 249 22.9
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 5.2e-10 72.4 333 22.8
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 5.2e-10 72.4 567 20.5
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 5.2e-10 72.4 249 22.9
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 5.2e-10 72.4 330 22.1
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 5.2e-10 72.4 249 22.9
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 6.8e-10 72.0 249 22.5
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 6.8e-10 72.0 249 22.9
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 6.8e-10 72.0 249 22.9
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 6.8e-10 72.0 249 22.9
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 6.8e-10 72.0 249 22.9
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 6.8e-10 72.0 249 22.9
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 8.9e-10 71.6 330 22.1
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.2e-09 71.2 249 22.9
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 1.2e-09 71.2 250 22.8
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.2e-09 71.2 245 24.5
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.2e-09 71.2 242 23.1
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 1.5e-09 70.9 249 22.5
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 2.0e-09 70.5 249 22.9
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 2.0e-09 70.5 253 23.7
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 2.6e-09 70.1 249 22.5
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.6e-09 70.1 249 22.9
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 3.4e-09 69.7 334 21.9
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 3.4e-09 69.7 249 22.5
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 3.4e-09 69.7 249 22.5
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 4.4e-09 69.3 249 22.1
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 4.4e-09 69.3 249 22.9
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 1.3e-08 67.8 247 23.1
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.2e-08 67.0 249 22.5
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 2.9e-08 66.6 239 23.0


User provided reference genes

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