Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 0.0e+00 1714.1 1283 100.0
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 7.4e-43 180.6 343 36.4
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 9.7e-43 180.3 335 36.4
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 1.4e-41 176.4 343 36.4
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 1.4e-41 176.4 345 36.2
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 4.1e-41 174.9 337 36.5
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 5.3e-41 174.5 336 36.9
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 6.9e-41 174.1 241 44.4
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 6.9e-41 174.1 336 37.2
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 9.1e-41 173.7 340 35.9
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 9.1e-41 173.7 341 35.8
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 1.5e-40 172.9 337 35.9
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 1.5e-40 172.9 339 35.7
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 1.5e-40 172.9 585 28.7
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 2.0e-40 172.6 340 35.9
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.6e-40 172.2 392 33.9
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 2.6e-40 172.2 343 34.4
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 2.6e-40 172.2 341 36.7
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 2.6e-40 172.2 340 35.9
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 3.4e-40 171.8 629 27.3
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 4.5e-40 171.4 336 36.9
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 4.5e-40 171.4 577 30.3
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 5.9e-40 171.0 338 36.1
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 5.9e-40 171.0 577 30.5
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.0e-39 170.2 236 43.2
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.0e-39 170.2 345 34.8
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 1.0e-39 170.2 345 34.8
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 1.0e-39 170.2 340 35.0
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.0e-39 170.2 348 36.8
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 1.3e-39 169.9 348 36.8
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.7e-39 169.5 350 36.0
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 1.7e-39 169.5 333 35.4
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 2.2e-39 169.1 340 34.4
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 2.2e-39 169.1 246 42.7
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 2.9e-39 168.7 348 36.5
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 2.9e-39 168.7 337 35.6
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 3.8e-39 168.3 353 35.1
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 3.8e-39 168.3 344 36.6
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 3.8e-39 168.3 344 36.6
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 3.8e-39 168.3 348 36.2
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 5.0e-39 167.9 344 36.0
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 5.0e-39 167.9 598 29.4
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 5.0e-39 167.9 341 35.5
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 5.0e-39 167.9 350 35.1
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 5.0e-39 167.9 595 28.7
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 5.0e-39 167.9 350 34.9
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 5.0e-39 167.9 584 30.3
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 6.5e-39 167.5 353 35.1
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 6.5e-39 167.5 344 36.3
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 6.5e-39 167.5 344 36.3
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 8.5e-39 167.2 350 35.4
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 8.5e-39 167.2 350 35.4
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 1.1e-38 166.8 246 41.5
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 1.1e-38 166.8 246 41.5
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.4e-38 166.4 353 34.8
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 1.4e-38 166.4 353 34.3
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 1.4e-38 166.4 344 35.8
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 1.4e-38 166.4 344 35.8
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 1.4e-38 166.4 246 43.1
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 1.9e-38 166.0 345 35.4
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.9e-38 166.0 241 41.9
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 1.9e-38 166.0 240 44.2
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 2.5e-38 165.6 246 42.3
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 2.5e-38 165.6 246 42.7
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 3.2e-38 165.2 341 35.2
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 3.2e-38 165.2 694 26.4
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 4.2e-38 164.9 249 42.2
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 4.2e-38 164.9 249 42.2
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.2e-38 164.9 246 41.9
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 4.2e-38 164.9 341 35.5
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 5.5e-38 164.5 629 27.0
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 5.5e-38 164.5 629 27.0
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 5.5e-38 164.5 335 34.3
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 5.5e-38 164.5 246 42.7
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 7.2e-38 164.1 352 35.5
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 1.2e-37 163.3 357 33.6
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 1.2e-37 163.3 579 28.0
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 1.6e-37 162.9 343 34.1
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.6e-37 162.9 347 34.0
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.6e-37 162.9 241 41.5
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 2.1e-37 162.5 346 34.1
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.1e-37 162.5 349 35.0
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 2.7e-37 162.2 250 41.6
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.7e-37 162.2 249 42.2
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 3.6e-37 161.8 343 33.8
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 4.7e-37 161.4 347 34.0
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 4.7e-37 161.4 229 42.8
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 6.1e-37 161.0 333 35.1
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 1.0e-36 160.2 341 36.4
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 1.8e-36 159.5 346 32.7
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 2.3e-36 159.1 331 33.5
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.3e-36 159.1 344 35.5
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 5.1e-36 157.9 343 33.8
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 6.7e-36 157.5 578 28.4
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 1.1e-35 156.8 231 41.6
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 1.1e-35 156.8 331 33.5
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 1.5e-35 156.4 236 40.7
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 2.0e-35 156.0 246 41.1
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 3.3e-35 155.2 241 41.9
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 3.3e-35 155.2 236 40.3
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 4.4e-35 154.8 235 41.3
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 5.7e-35 154.5 622 26.5
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 5.7e-35 154.5 350 33.4
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 7.4e-35 154.1 331 34.1
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 9.7e-35 153.7 596 28.0
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 1.3e-34 153.3 225 41.8
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.2e-34 152.5 352 32.7
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 2.2e-34 152.5 291 37.1
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 4.8e-34 151.4 235 40.9
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 8.2e-34 150.6 219 42.9
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 1.1e-33 150.2 273 37.0
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 1.1e-33 150.2 219 43.4
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 3.1e-33 148.7 343 32.4
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 4.1e-33 148.3 391 31.7
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 7.0e-33 147.5 216 43.5
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 1.2e-32 146.7 216 43.5
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 2.6e-32 145.6 216 43.1
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 3.5e-32 145.2 475 29.1
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 4.5e-32 144.8 246 39.8
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 1.3e-31 143.3 208 43.3
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 2.9e-31 142.1 246 37.4
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 5.0e-31 141.4 239 38.9
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 1.5e-30 139.8 348 32.5
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 4.7e-29 134.8 301 34.2
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 6.1e-29 134.4 178 46.1
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 8.0e-29 134.0 179 46.9
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 1.4e-28 133.3 578 26.8
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 3.3e-27 128.6 198 38.9
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 7.5e-27 127.5 204 39.7
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 1.1e-25 123.6 249 33.3
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.2e-24 120.2 240 34.2
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.5e-24 118.6 328 33.2
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.5e-22 112.5 244 37.3
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 5.5e-22 111.3 248 35.5
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 6.8e-20 104.4 170 36.5
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 6.3e-18 97.8 226 33.6
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 1.1e-14 87.0 217 29.5
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 1.2e-13 83.6 230 30.9
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.0e-12 80.5 83 53.0
Zm00001eb137620 Zea mays HOM05D003450 ORTHO05D004150 2.3e-12 79.3 149 34.9
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 2.0e-11 76.3 216 29.2
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 9.8e-11 73.9 113 41.6
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 9.8e-11 73.9 113 41.6
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 6.3e-10 71.2 61 57.4
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 2.0e-08 66.2 89 44.9
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 1.1e-06 60.5 150 32.0
arahy.Tifrunner.gnm1.ann1.CAW9WT Arachis hypogaea HOM05D003450 ORTHO05D026894 1.1e-06 60.5 91 45.1
arahy.Tifrunner.gnm1.ann1.F4W2B8 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.5e-06 60.1 92 44.6


User provided reference genes

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