Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023385 Carpinus fangiana HOM05D005456 ORTHO05D028567 8.2e-266 919.8 468 100.0
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 1.1e-12 79.0 271 25.8
Eucgr.G02479 Eucalyptus grandis HOM05D005456 ORTHO05D006805 1.4e-12 78.6 428 25.0
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 2.5e-12 77.8 480 24.0
MCO05G022 Micromonas commoda HOM05D007044 ORTHO05D028567 3.2e-12 77.4 362 24.6
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 7.2e-12 76.3 270 25.2
PRCOL_00000792 Prasinoderma coloniale HOM05D004224 ORTHO05D028567 7.2e-12 76.3 291 26.5
ATR0564G531 Amborella trichopoda HOM05D005456 ORTHO05D006805 9.4e-12 75.9 296 24.7
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 1.2e-11 75.5 291 26.5
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 1.2e-11 75.5 258 27.9
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 2.1e-11 74.7 431 23.9
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 2.1e-11 74.7 261 28.4
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 4.7e-11 73.6 261 28.4
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 6.1e-11 73.2 294 27.2
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 6.1e-11 73.2 297 28.3
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 6.1e-11 73.2 297 28.3
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 6.1e-11 73.2 314 23.6
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 7.9e-11 72.8 298 27.9
Sc04g0007920 Simmondsia chinensis HOM05D005456 ORTHO05D006805 7.9e-11 72.8 441 23.4
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 1.0e-10 72.4 291 24.1
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 1.4e-10 72.0 277 26.0
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 1.4e-10 72.0 290 26.9
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 2.3e-10 71.2 273 23.1
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 3.0e-10 70.9 257 26.8
SMO367G0558 Selaginella moellendorffii HOM05D005456 ORTHO05D006805 3.0e-10 70.9 426 24.4
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 3.9e-10 70.5 277 26.7
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 3.9e-10 70.5 290 26.6
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 3.9e-10 70.5 323 22.3
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 5.1e-10 70.1 282 25.9
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 6.7e-10 69.7 275 28.7
Eucgr.A01370 Eucalyptus grandis HOM05D004224 ORTHO05D006437 6.7e-10 69.7 271 26.6
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 6.7e-10 69.7 267 25.1
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 8.8e-10 69.3 257 27.2
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 1.1e-09 68.9 260 28.8
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 2.0e-09 68.2 326 21.8
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 2.0e-09 68.2 324 23.1
BraA09t41618Z Brassica rapa HOM05D005456 ORTHO05D006805 2.6e-09 67.8 418 23.2
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 2.6e-09 67.8 281 23.1
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 2.6e-09 67.8 257 27.6
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 2.6e-09 67.8 262 26.3
Aa31LG1G1000 Aethionema arabicum HOM05D005456 ORTHO05D006805 3.3e-09 67.4 469 23.0
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 3.3e-09 67.4 330 23.3
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 3.3e-09 67.4 258 26.7
GSVIVG01011666001 Vitis vinifera HOM05D005416 ORTHO05D007956 4.4e-09 67.0 287 25.8
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 5.7e-09 66.6 247 27.1
Nitab4.5_0011915g0020 Nicotiana tabacum HOM05D005456 ORTHO05D006805 5.7e-09 66.6 437 21.7
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 7.4e-09 66.2 428 23.4
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 7.4e-09 66.2 245 26.1
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 7.4e-09 66.2 480 21.9
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 9.7e-09 65.9 440 20.2
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 1.3e-08 65.5 247 26.7
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 1.3e-08 65.5 428 23.4
CBR_g780 Chara braunii HOM05D005456 ORTHO05D006805 1.3e-08 65.5 468 24.6
DCAR_030997 Daucus carota HOM05D005456 ORTHO05D006805 1.3e-08 65.5 469 23.0
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 1.3e-08 65.5 258 26.4
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 1.3e-08 65.5 241 22.4
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 2.2e-08 64.7 414 21.0
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 2.2e-08 64.7 256 28.5
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 2.2e-08 64.7 291 23.4
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 2.8e-08 64.3 425 23.3
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 2.8e-08 64.3 284 23.9
C08p46110 Brassica napus HOM05D005456 ORTHO05D006805 3.7e-08 63.9 418 23.0
CAN.G964.12 Capsicum annuum HOM05D005456 ORTHO05D006805 3.7e-08 63.9 471 22.1
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 3.7e-08 63.9 441 22.0
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 4.8e-08 63.5 330 22.7
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 4.8e-08 63.5 276 23.2
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 4.8e-08 63.5 290 26.2
Sopen05g007900 Solanum pennellii HOM05D005456 ORTHO05D006805 4.8e-08 63.5 438 21.7
A09p62550 Brassica napus HOM05D005456 ORTHO05D006805 6.3e-08 63.2 418 22.7
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 6.3e-08 63.2 300 20.0
Thhalv10007614m.g Eutrema salsugineum HOM05D005456 ORTHO05D006805 6.3e-08 63.2 428 22.7
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 8.2e-08 62.8 331 22.4
Solyc05g013160.4 Solanum lycopersicum HOM05D005456 ORTHO05D006805 8.2e-08 62.8 438 21.7
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 1.1e-07 62.4 428 22.2
Eucgr.B01036 Eucalyptus grandis HOM05D005456 ORTHO05D006805 1.1e-07 62.4 388 23.2
Medtr4g082305 Medicago truncatula HOM05D005456 ORTHO05D006805 1.1e-07 62.4 258 24.0
PGSC0003DMG400028348 Solanum tuberosum HOM05D005456 ORTHO05D006805 1.1e-07 62.4 438 21.7
Ciclev10031325m.g Citrus clementina HOM05D005456 ORTHO05D006805 1.4e-07 62.0 469 22.2
Eucgr.B01038 Eucalyptus grandis HOM05D005456 ORTHO05D006805 1.4e-07 62.0 395 23.3
PGR119G2207 Punica granatum HOM05D005456 ORTHO05D006805 1.4e-07 62.0 249 30.1
CARHR014400 Cardamine hirsuta HOM05D005456 ORTHO05D006805 1.8e-07 61.6 421 23.5
Lj4g0024233 Lotus japonicus HOM05D005456 ORTHO05D006805 2.4e-07 61.2 428 22.7
TAR622G0968 Trochodendron aralioides HOM05D005456 ORTHO05D006805 2.4e-07 61.2 98 34.7
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 3.1e-07 60.8 259 22.4
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 3.1e-07 60.8 427 23.0
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 3.1e-07 60.8 314 22.6
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 3.1e-07 60.8 134 31.3
vmacro16348 Vaccinium macrocarpon HOM05D005456 ORTHO05D006805 3.1e-07 60.8 129 31.8
Atru.chr11.1728 Acer truncatum HOM05D005456 ORTHO05D006805 4.1e-07 60.5 427 22.2
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 4.1e-07 60.5 295 24.4
SMO367G0389 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 4.1e-07 60.5 129 32.6
Hund25214 Selenicereus undatus HOM05D005456 ORTHO05D006805 4.1e-07 60.5 436 21.1
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 4.1e-07 60.5 295 26.1
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 4.1e-07 60.5 485 20.2
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 5.3e-07 60.1 475 22.1
TPR.G16163 Trifolium pratense HOM05D004224 ORTHO05D006437 5.3e-07 60.1 211 26.5
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 5.3e-07 60.1 284 21.5
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 5.3e-07 60.1 102 36.3
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 7.0e-07 59.7 341 21.7
BolC8t52161H Brassica oleracea HOM05D005456 ORTHO05D006805 7.0e-07 59.7 418 22.0
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 7.0e-07 59.7 427 22.7
Mapoly0065s0091 Marchantia polymorpha HOM05D005456 ORTHO05D006805 7.0e-07 59.7 119 31.1
RcHm_v2.0_Chr4g0439211 Rosa chinensis HOM05D005456 ORTHO05D006805 7.0e-07 59.7 129 34.1
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 9.1e-07 59.3 329 20.1
Ca_08719_v3 Cicer arietinum L. HOM05D005456 ORTHO05D006805 9.1e-07 59.3 257 24.1
PGR119G0095 Punica granatum HOM05D005456 ORTHO05D006805 9.1e-07 59.3 253 26.9
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 1.2e-06 58.9 289 22.8
CAN.G964.8 Capsicum annuum HOM05D005456 ORTHO05D006805 1.2e-06 58.9 472 22.0
Cc11_g12670 Coffea canephora HOM05D005456 ORTHO05D006805 1.2e-06 58.9 442 21.7
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 1.2e-06 58.9 137 31.4
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 1.2e-06 58.9 297 25.6
AT1G14030 Arabidopsis thaliana HOM05D005456 ORTHO05D006805 1.6e-06 58.5 431 23.0
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 1.6e-06 58.5 458 21.8
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 1.6e-06 58.5 427 23.0
Lalb_Chr16g0385691 Lupinus albus HOM05D005456 ORTHO05D006805 1.6e-06 58.5 260 23.5
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 1.6e-06 58.5 422 24.2
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 2.0e-06 58.2 96 36.5
Mapoly0152s0006 Marchantia polymorpha HOM05D004224 ORTHO05D001113 2.0e-06 58.2 265 24.5
Sp1g12390 Schrenkiella parvula HOM05D005456 ORTHO05D006805 2.0e-06 58.2 427 22.7
Sed0000456 Sechium edule HOM05D005456 ORTHO05D006805 2.0e-06 58.2 434 23.5
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 2.0e-06 58.2 422 23.9
VMungo0251G2245 Vigna mungo HOM05D005456 ORTHO05D006805 2.0e-06 58.2 259 23.9
arahy.Tifrunner.gnm1.ann1.YEC905 Arachis hypogaea HOM05D005456 ORTHO05D006805 2.6e-06 57.8 259 24.3
CAN.G36.1 Capsicum annuum HOM05D005416 ORTHO05D007956 2.6e-06 57.8 294 24.5
Cpa.g.sc991.1 Carica papaya HOM05D005456 ORTHO05D006805 2.6e-06 57.8 96 34.4
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 2.6e-06 57.8 432 21.5
Gohir.D02G127000 Gossypium hirsutum HOM05D005456 ORTHO05D006805 2.6e-06 57.8 427 22.2
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 2.6e-06 57.8 439 22.1
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 2.6e-06 57.8 422 23.9
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 3.5e-06 57.4 121 31.4
Hma1.2p1_0354F.1_g133880 Hydrangea macrophylla HOM05D005456 ORTHO05D006805 3.5e-06 57.4 96 36.5
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 3.5e-06 57.4 130 33.8
Psat7g008160 Pisum sativum HOM05D005416 ORTHO05D007956 3.5e-06 57.4 287 25.8
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 4.5e-06 57.0 333 21.6
AL1G25870 Arabidopsis lyrata HOM05D005456 ORTHO05D006805 4.5e-06 57.0 418 22.7
CiPaw.05G130300 Carya illinoinensis HOM05D005456 ORTHO05D006805 4.5e-06 57.0 262 24.8
Hma1.2p1_0354F.1_g133890 Hydrangea macrophylla HOM05D005456 ORTHO05D006805 4.5e-06 57.0 129 30.2
MBI04_g40842_MAGBIO Magnolia biondii HOM05D006557 ORTHO05D008177 4.5e-06 57.0 158 29.1
Oeu044016.1 Olea europaea HOM05D005416 ORTHO05D007956 4.5e-06 57.0 469 21.3
GSVIVG01003217001 Vitis vinifera HOM05D005456 ORTHO05D006805 4.5e-06 57.0 96 34.4
Aqoxy3G03473 Aquilegia oxysepala HOM05D005456 ORTHO05D006805 5.9e-06 56.6 427 21.5
Gorai.005G142600 Gossypium raimondii HOM05D005456 ORTHO05D006805 5.9e-06 56.6 427 22.0
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 5.9e-06 56.6 133 30.1
Pp3c1_8530 Physcomitrium patens HOM05D005416 ORTHO05D007956 5.9e-06 56.6 428 23.1
Potri.008G090500 Populus trichocarpa HOM05D005456 ORTHO05D006805 5.9e-06 56.6 470 22.6
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 7.7e-06 56.2 96 35.4
Medtr8g105200 Medicago truncatula HOM05D005416 ORTHO05D007956 7.7e-06 56.2 294 25.5


User provided reference genes

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