Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 7.5e-155 550.4 270 100.0
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 6.7e-63 245.0 264 49.6
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 5.7e-62 241.9 263 48.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 5.7e-62 241.9 261 47.1
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.1e-60 237.7 260 48.1
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.0e-60 235.0 258 48.1
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 9.1e-60 234.6 258 47.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 9.1e-60 234.6 258 47.7
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.6e-59 233.8 260 47.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.0e-59 233.4 260 47.3
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 2.0e-59 233.4 260 47.3
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 2.0e-59 233.4 260 46.2
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.6e-59 233.0 261 47.9
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 2.6e-59 233.0 260 47.3
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 3.5e-59 232.6 263 46.0
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 3.5e-59 232.6 261 47.1
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 5.9e-59 231.9 263 46.0
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 5.9e-59 231.9 261 47.5
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.9e-59 231.9 260 46.9
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 5.9e-59 231.9 260 45.8
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 5.9e-59 231.9 262 46.6
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.0e-58 231.1 261 46.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.0e-58 231.1 260 46.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.0e-58 231.1 260 46.9
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.3e-58 230.7 262 46.9
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.3e-58 230.7 263 45.6
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.7e-58 230.3 261 46.0
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.7e-58 230.3 260 46.5
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-58 230.3 260 46.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.9e-58 229.6 261 45.6
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.9e-58 229.6 261 45.6
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 2.9e-58 229.6 262 45.0
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.9e-58 229.6 260 46.5
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 3.8e-58 229.2 261 46.7
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 3.8e-58 229.2 260 45.4
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 5.0e-58 228.8 261 45.6
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 5.0e-58 228.8 261 47.9
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 5.0e-58 228.8 260 47.3
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 6.5e-58 228.4 260 45.0
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 6.5e-58 228.4 260 46.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 6.5e-58 228.4 260 47.3
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 8.5e-58 228.0 261 45.6
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 8.5e-58 228.0 263 47.5
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 8.5e-58 228.0 260 46.5
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 8.5e-58 228.0 260 46.2
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.1e-57 227.6 261 46.0
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.1e-57 227.6 261 45.6
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.1e-57 227.6 261 46.4
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.5e-57 227.3 261 45.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.5e-57 227.3 261 47.9
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.5e-57 227.3 261 46.0
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.5e-57 227.3 261 46.0
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.9e-57 226.9 261 47.5
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.5e-57 226.5 260 46.5
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.2e-57 226.1 262 46.6
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.2e-57 226.1 260 47.3
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 4.2e-57 225.7 260 45.4
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 4.2e-57 225.7 260 45.4
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 4.2e-57 225.7 261 46.0
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 5.5e-57 225.3 260 46.9
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 5.5e-57 225.3 261 46.4
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 5.5e-57 225.3 261 45.2
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.2e-56 224.2 260 45.4
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.6e-56 223.8 261 44.1
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.6e-56 223.8 260 45.0
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.6e-56 223.8 265 45.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.6e-56 223.8 260 45.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.1e-56 223.4 261 46.4
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 2.7e-56 223.0 262 44.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.7e-56 223.0 257 45.9
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 2.7e-56 223.0 260 46.2
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 4.7e-56 222.2 260 45.0
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.7e-56 222.2 262 45.4
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.7e-56 222.2 264 45.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 6.1e-56 221.9 260 45.0
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 8.0e-56 221.5 260 45.8
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 8.0e-56 221.5 260 45.8
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 8.0e-56 221.5 263 44.9
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 8.0e-56 221.5 261 46.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.4e-55 220.7 260 45.4
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.8e-55 220.3 260 45.4
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.8e-55 220.3 261 44.4
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.8e-55 220.3 277 41.5
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.3e-55 219.9 266 44.7
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 2.3e-55 219.9 260 45.0
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 6.8e-55 218.4 260 44.2
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 6.8e-55 218.4 260 44.2
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 6.8e-55 218.4 265 44.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.2e-54 217.6 267 45.3
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.5e-54 217.2 266 44.4
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.0e-54 216.9 261 44.4
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 4.4e-54 215.7 266 44.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 2.8e-53 213.0 262 43.9
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.3e-53 211.8 294 41.8
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.1e-52 211.1 294 41.8
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-52 210.7 294 41.8
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.1e-52 209.5 266 43.6
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.1e-52 209.1 284 41.9
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.1e-52 209.1 284 41.9
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.1e-52 209.1 253 45.1
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 7.0e-52 208.4 244 44.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.0e-50 204.5 257 43.2
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 5.0e-50 202.2 251 43.4
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.5e-49 199.9 282 40.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 6.1e-48 195.3 251 43.0
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.1e-48 195.3 232 43.1
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.0e-47 194.5 231 45.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 8.8e-47 191.4 269 40.9
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.2e-46 191.0 294 38.8
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.7e-45 187.2 260 40.8
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 6.3e-45 185.3 260 41.2
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 8.3e-45 184.9 245 42.9
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.8e-44 183.7 271 40.6
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.2e-43 181.0 209 46.4
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.7e-42 177.2 206 45.1
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.1e-41 174.5 250 38.0
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 7.2e-41 171.8 202 45.5
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.1e-40 170.2 324 34.3
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.9e-37 159.8 261 35.6
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 8.3e-37 158.3 188 45.2
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.4e-36 156.8 184 42.9
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 5.4e-36 155.6 260 36.5
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.0e-34 151.4 248 38.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 4.3e-33 146.0 174 40.8
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.1e-32 143.7 239 38.1
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.3e-31 140.2 148 45.3
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 7.0e-28 128.6 185 37.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.7e-27 126.7 150 40.7
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.6e-27 125.9 186 38.2
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.3e-25 119.4 186 38.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 4.3e-25 119.4 174 38.5
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.5e-22 110.9 142 43.0
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.4e-22 109.4 126 43.7
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 5.8e-22 109.0 171 33.9
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 9.8e-22 108.2 158 38.0
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 9.8e-22 108.2 158 38.0
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 9.8e-22 108.2 120 42.5
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.3e-21 107.8 178 38.2
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 4.9e-21 105.9 143 37.8
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 8.3e-21 105.1 109 54.1
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.2e-19 101.3 109 53.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.1e-19 100.5 112 42.9
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.3e-18 97.8 135 37.0
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 4.4e-14 82.8 81 54.3
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 6.4e-13 79.0 80 56.2
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 7.1e-12 75.5 108 37.0
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.2e-11 74.7 69 50.7
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 4.6e-11 72.8 114 43.0
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.0e-10 70.1 71 50.7
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 5.1e-10 69.3 87 34.5
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-08 64.7 92 37.0
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 6.2e-08 62.4 62 51.6
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 2.0e-06 57.4 58 51.7
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 7.6e-06 55.5 59 49.2
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 7.6e-06 55.5 59 49.2
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.9e-06 55.1 64 42.2


User provided reference genes

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