Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 2.8e-252 874.8 440 100.0
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 2.4e-62 243.8 427 36.3
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 9.3e-62 241.9 434 35.3
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 1.8e-60 237.7 434 34.6
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 8.7e-60 235.3 437 33.4
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 1.1e-59 235.0 437 33.9
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 1.9e-59 234.2 427 35.1
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 4.3e-59 233.0 433 35.3
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 4.3e-59 233.0 433 34.2
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 5.6e-59 232.6 434 33.2
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 7.4e-59 232.3 434 35.9
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 7.4e-59 232.3 427 34.4
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 9.6e-59 231.9 433 33.0
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.3e-58 231.5 433 34.6
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-58 231.5 433 33.0
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.3e-58 231.5 433 34.4
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 1.3e-58 231.5 433 34.2
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 1.3e-58 231.5 433 35.3
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 2.1e-58 230.7 433 33.5
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 2.1e-58 230.7 433 34.9
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 2.1e-58 230.7 433 34.2
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.1e-58 230.7 437 33.6
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 2.8e-58 230.3 436 34.4
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 2.8e-58 230.3 433 33.7
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 3.7e-58 229.9 434 35.9
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 3.7e-58 229.9 434 35.7
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 3.7e-58 229.9 434 34.3
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 4.8e-58 229.6 433 32.8
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 4.8e-58 229.6 431 36.0
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 4.8e-58 229.6 427 34.7
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 4.8e-58 229.6 427 34.7
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 6.2e-58 229.2 427 34.2
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 8.1e-58 228.8 428 34.6
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.1e-57 228.4 433 32.6
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.4e-57 228.0 434 33.4
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.4e-57 228.0 427 34.4
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 1.4e-57 228.0 427 34.7
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 1.8e-57 227.6 425 34.6
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.8e-57 227.6 427 35.1
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 2.4e-57 227.3 433 33.5
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 2.4e-57 227.3 433 33.3
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 2.4e-57 227.3 427 33.7
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 3.1e-57 226.9 427 33.3
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 3.1e-57 226.9 427 33.7
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 3.1e-57 226.9 433 33.5
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 3.1e-57 226.9 433 33.9
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 3.1e-57 226.9 427 34.4
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 4.0e-57 226.5 433 33.7
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 4.0e-57 226.5 441 34.7
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 5.3e-57 226.1 427 34.2
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 5.3e-57 226.1 432 33.8
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 6.9e-57 225.7 432 33.8
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 6.9e-57 225.7 435 33.3
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 9.0e-57 225.3 433 32.8
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 9.0e-57 225.3 427 34.2
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.2e-56 224.9 433 33.5
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 1.5e-56 224.6 427 33.0
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.5e-56 224.6 435 34.5
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.5e-56 224.6 427 33.3
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.6e-56 223.8 427 33.0
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 2.6e-56 223.8 427 35.6
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 3.4e-56 223.4 432 32.6
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 3.4e-56 223.4 427 34.0
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 3.4e-56 223.4 433 32.8
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.5e-56 223.0 433 33.0
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 4.5e-56 223.0 433 32.8
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.5e-56 223.0 427 33.3
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 5.8e-56 222.6 427 32.6
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 5.8e-56 222.6 427 32.6
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 5.8e-56 222.6 433 33.0
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 5.8e-56 222.6 433 33.3
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 5.8e-56 222.6 427 33.5
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 5.8e-56 222.6 427 32.8
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 5.8e-56 222.6 433 33.0
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 5.8e-56 222.6 433 33.0
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 7.6e-56 222.2 432 33.3
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 1.0e-55 221.9 434 33.6
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.0e-55 221.9 427 34.2
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.3e-55 221.5 433 32.6
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.3e-55 221.5 427 34.2
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.3e-55 221.5 430 35.1
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 1.7e-55 221.1 433 32.8
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.7e-55 221.1 433 33.3
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.7e-55 221.1 434 32.9
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 1.7e-55 221.1 427 33.0
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 1.7e-55 221.1 427 34.7
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 1.7e-55 221.1 433 33.3
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 2.2e-55 220.7 433 32.3
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.2e-55 220.7 427 32.8
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 2.2e-55 220.7 433 33.9
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.2e-55 220.7 433 32.8
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 2.9e-55 220.3 433 32.3
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 2.9e-55 220.3 433 32.3
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 2.9e-55 220.3 427 34.0
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.9e-55 220.3 427 33.7
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.9e-55 220.3 427 32.8
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 2.9e-55 220.3 427 33.3
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 2.9e-55 220.3 427 32.6
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 2.9e-55 220.3 433 33.9
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 3.8e-55 219.9 433 32.8
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 4.9e-55 219.5 433 32.3
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 6.5e-55 219.2 432 33.1
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 6.5e-55 219.2 433 32.6
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 6.5e-55 219.2 433 33.3
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 1.1e-54 218.4 432 33.1
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 1.9e-54 217.6 432 33.6
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 1.9e-54 217.6 437 33.0
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 2.5e-54 217.2 433 33.5
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 2.5e-54 217.2 433 32.6
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 3.2e-54 216.9 433 32.6
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 3.2e-54 216.9 424 34.0
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 3.2e-54 216.9 424 34.0
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 3.2e-54 216.9 433 32.3
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 3.2e-54 216.9 430 33.0
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 3.2e-54 216.9 434 32.3
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 3.2e-54 216.9 427 32.6
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 3.2e-54 216.9 430 34.0
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.2e-54 216.5 433 32.3
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 4.2e-54 216.5 427 34.2
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 7.1e-54 215.7 432 34.0
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 9.3e-54 215.3 433 32.6
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 9.3e-54 215.3 435 33.8
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 9.3e-54 215.3 439 33.3
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 2.1e-53 214.2 433 32.1
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 3.5e-53 213.4 427 32.3
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 4.6e-53 213.0 421 34.0
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.8e-52 211.1 432 33.1
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 2.3e-52 210.7 400 34.2
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 5.1e-52 209.5 431 32.5
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 3.3e-51 206.8 428 34.3
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 4.5e-48 196.4 400 31.5
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 7.6e-48 195.7 400 32.0
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.3e-47 194.9 402 32.1
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 2.2e-47 194.1 400 32.0
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 2.5e-46 190.7 408 31.4
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 6.9e-41 172.6 233 42.1
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 1.3e-39 168.3 433 28.9
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 3.8e-39 166.8 288 36.1
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.1e-33 148.7 381 28.9
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 5.3e-33 146.4 436 27.3
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 2.2e-31 141.0 427 26.9
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 3.6e-29 133.7 196 38.8
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 1.7e-26 124.8 391 28.1
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 4.5e-24 116.7 189 36.5
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 4.2e-22 110.2 233 31.8
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 6.1e-21 106.3 232 30.6
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 6.1e-21 106.3 434 23.7
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 4.0e-20 103.6 232 29.7
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 2.6e-19 100.9 143 38.5
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 4.4e-19 100.1 233 30.9
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 2.8e-18 97.4 202 30.7
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.5e-14 84.3 233 28.3
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.2e-14 83.6 202 30.7
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 8.0e-13 79.3 122 36.1
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.0e-12 77.4 122 35.2
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 4.0e-12 77.0 191 28.3
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 5.7e-11 73.2 181 29.3
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.2e-10 71.2 100 40.0
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 7.0e-09 66.2 175 28.0
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 7.0e-09 66.2 175 29.1
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 2.7e-08 64.3 175 27.4
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.0e-07 62.4 87 36.8
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 1.0e-07 62.4 78 41.0
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 5.5e-06 56.6 167 26.3
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 5.5e-06 56.6 170 26.5
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.4e-06 55.8 92 32.6


User provided reference genes

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