Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 5.6e-93 344.4 185 100.0
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 1.6e-87 326.2 185 95.7
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 3.9e-62 241.9 181 71.3
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 1.4e-59 233.4 145 86.2
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 6.7e-54 214.5 182 67.0
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 3.3e-45 185.7 177 59.3
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 1.8e-43 179.9 174 59.8
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 5.3e-43 178.3 189 53.4
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 5.3e-43 178.3 182 54.9
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 6.9e-43 177.9 179 55.9
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 6.9e-43 177.9 179 55.9
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 6.9e-43 177.9 176 56.8
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 9.1e-43 177.6 179 55.3
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 2.2e-41 172.9 191 51.8
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 5.0e-41 171.8 186 59.1
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 5.0e-41 171.8 184 58.7
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 5.5e-40 168.3 200 50.5
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 5.5e-40 168.3 200 50.5
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 2.1e-39 166.4 188 55.3
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 2.7e-39 166.0 173 56.1
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 7.9e-39 164.5 177 53.7
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 1.0e-38 164.1 177 57.1
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 1.4e-38 163.7 173 54.9
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 3.9e-38 162.2 179 50.3
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 3.9e-38 162.2 166 56.6
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 1.5e-37 160.2 188 58.0
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 2.6e-37 159.5 164 53.7
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 5.7e-37 158.3 171 56.1
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 1.7e-36 156.8 174 58.6
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 1.7e-36 156.8 169 52.1
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 2.8e-36 156.0 186 57.5
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 6.9e-35 151.4 161 52.2
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 9.1e-35 151.0 166 53.0
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 1.7e-33 146.7 174 52.9
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 6.5e-33 144.8 169 51.5
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 1.9e-32 143.3 175 50.3
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 2.5e-32 142.9 171 49.1
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 4.2e-32 142.1 180 49.4
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 1.6e-31 140.2 167 49.7
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 4.7e-31 138.7 156 50.0
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 4.7e-31 138.7 159 49.1
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 6.1e-31 138.3 162 52.5
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 6.1e-31 138.3 169 50.9
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 3.0e-30 136.0 183 45.9
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 2.0e-29 133.3 193 44.6
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 3.3e-29 132.5 170 48.8
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 7.4e-29 131.3 176 48.3
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.7e-28 130.2 163 53.4
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 8.2e-28 127.9 166 50.0
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 8.2e-28 127.9 154 55.8
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 7.0e-27 124.8 166 47.0
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.2e-26 124.0 161 47.2
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 4.5e-26 122.1 159 50.9
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 5.9e-26 121.7 174 47.1
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 5.9e-26 121.7 161 45.3
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 2.2e-25 119.8 162 49.4
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 5.0e-25 118.6 164 50.0
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 1.1e-24 117.5 194 42.3
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 3.2e-24 115.9 167 47.9
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 3.2e-24 115.9 164 48.8
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 7.2e-24 114.8 171 47.4
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 1.2e-23 114.0 171 47.4
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 3.6e-23 112.5 171 46.8
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 3.6e-23 112.5 171 46.8
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 3.6e-23 112.5 171 46.8
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 4.7e-23 112.1 164 42.1
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 6.1e-23 111.7 174 46.0
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 6.1e-23 111.7 171 45.0
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 1.0e-22 110.9 147 49.0
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 4.0e-22 109.0 169 43.8
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 1.5e-21 107.1 181 40.9
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 2.6e-21 106.3 169 45.0
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 2.6e-21 106.3 169 45.0
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 5.7e-21 105.1 171 44.4
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 5.7e-21 105.1 171 44.4
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 7.5e-21 104.8 136 48.5
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 4.8e-20 102.1 161 46.6
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 1.1e-19 100.9 177 39.0
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 2.4e-19 99.8 150 46.0
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 5.3e-19 98.6 152 46.1
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 5.3e-19 98.6 147 49.0
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 7.0e-19 98.2 171 41.5
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 7.0e-19 98.2 144 45.8
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 7.0e-19 98.2 144 45.8
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 9.1e-19 97.8 178 41.6
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 9.1e-19 97.8 178 41.6
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 1.6e-18 97.1 188 37.8
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 2.0e-18 96.7 145 40.7
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 2.0e-18 96.7 156 42.9
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 5.9e-18 95.1 165 41.2
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.0e-17 94.4 156 46.2
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 1.3e-17 94.0 153 41.2
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 1.7e-17 93.6 155 41.9
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 3.8e-17 92.4 148 43.2
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 8.5e-17 91.3 139 43.9
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.5e-16 90.5 188 41.5
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 7.2e-16 88.2 192 38.0
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 9.4e-16 87.8 183 41.5
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 2.7e-15 86.3 161 36.0
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 2.7e-15 86.3 166 39.2
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 4.7e-15 85.5 178 41.6
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 6.1e-15 85.1 177 40.7
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.0e-14 84.3 115 48.7
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 3.0e-14 82.8 148 41.2
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 3.4e-13 79.3 147 38.1
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 9.8e-13 77.8 149 39.6
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 3.7e-12 75.9 143 39.2
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 4.8e-12 75.5 176 35.2
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 5.4e-11 72.0 115 39.1
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 5.4e-11 72.0 137 38.7
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 2.9e-09 66.2 146 34.9
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 5.0e-09 65.5 140 35.7
QL05p058452 Quercus lobata HOM05D000045 ORTHO05D000611 8.6e-09 64.7 68 52.9
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 1.1e-08 64.3 36 75.0
Oeu027256.1 Olea europaea HOM05D006473 ORTHO05D008108 1.5e-08 63.9 114 42.1
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 1.5e-08 63.9 43 69.8
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 1.9e-08 63.5 165 33.3
FAN02G3828 Fragaria x ananassa HOM05D006473 ORTHO05D008108 1.0e-06 57.8 98 42.9
unitig_62.g23243 Utricularia gibba HOM05D006473 ORTHO05D008108 2.3e-06 56.6 134 34.3


User provided reference genes

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