Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 0.0e+00 1719.5 887 100.0
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1327.0 1090 70.4
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1252.3 929 73.5
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1215.3 1005 68.7
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1121.3 930 67.1
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1120.1 930 66.6
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1113.2 932 66.4
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1111.3 931 65.5
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1106.3 932 65.5
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1104.0 930 66.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1103.6 935 65.5
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1098.6 919 65.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1095.5 930 65.2
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1086.6 928 64.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1086.2 944 64.1
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1075.8 944 64.0
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 6.1e-312 1074.7 931 65.1
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 6.1e-312 1074.3 929 64.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 2.7e-310 1068.5 929 63.9
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 2.7e-310 1068.5 945 63.8
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 1.1e-308 1063.1 939 63.7
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.5e-308 1062.8 926 63.9
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 6.9e-306 1053.9 923 63.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 3.8e-304 1048.1 969 61.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 3.8e-304 1048.1 938 63.6
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 6.4e-304 1047.3 868 67.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 1.1e-303 1046.6 930 63.8
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 5.4e-303 1044.3 932 63.5
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.6e-302 1042.7 925 63.0
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 7.8e-302 1040.4 926 63.1
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.0e-301 1040.0 926 63.1
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.1e-300 1036.6 927 62.7
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.8e-298 1029.2 929 62.4
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 5.8e-297 1024.2 929 60.4
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 2.2e-296 1022.3 931 61.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 6.4e-296 1020.8 931 60.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.2e-295 1018.5 1094 55.1
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.6e-294 1016.1 938 62.2
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 7.9e-294 1013.8 933 61.5
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 9.6e-292 1006.9 926 60.7
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.4e-290 1003.0 919 60.3
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 1.8e-290 1002.7 928 61.3
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 3.2e-287 991.9 919 60.8
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 9.3e-287 990.3 944 60.7
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 6.7e-285 984.2 878 62.4
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.1e-284 983.4 931 57.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 7.4e-284 980.7 919 60.1
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 4.8e-283 978.0 969 58.1
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.2e-281 973.4 934 58.4
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 7.6e-281 970.7 872 62.2
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.0e-280 970.3 912 60.5
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 4.9e-280 968.0 942 59.1
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 1.6e-278 963.0 929 57.3
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 5.7e-276 954.5 917 58.0
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 4.1e-274 948.3 878 60.3
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 3.2e-271 938.7 921 56.9
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 9.4e-271 937.2 912 57.5
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 7.9e-270 934.1 924 56.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 3.9e-269 931.8 921 56.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 5.1e-269 931.4 934 56.1
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 1.5e-268 929.9 927 56.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 3.3e-268 928.7 928 57.1
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 6.9e-266 921.0 927 55.9
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 9.1e-266 920.6 921 56.5
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 1.5e-265 919.8 934 56.2
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 2.6e-265 919.1 913 57.1
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.3e-264 916.8 1141 50.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 7.9e-262 907.5 931 55.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 4.4e-260 901.7 997 52.4
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 8.2e-259 897.5 928 55.2
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.2e-257 893.6 931 54.9
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 2.9e-256 889.0 930 55.8
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.4e-255 886.7 926 55.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.2e-255 884.4 858 58.7
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.0e-253 880.6 774 63.8
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.5e-252 876.7 921 56.9
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.1e-250 870.5 912 53.5
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.8e-250 869.8 907 54.7
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 2.4e-250 869.4 926 53.8
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 5.0e-248 861.7 929 52.3
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 4.7e-246 855.1 954 52.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 6.8e-245 851.3 949 51.1
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.5e-241 839.0 877 54.5
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 6.8e-237 824.7 1034 49.1
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 5.7e-236 821.6 767 60.4
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 4.9e-227 792.0 516 80.0
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 9.8e-220 767.7 736 61.0
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.6e-217 760.4 893 49.4
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.6e-214 749.2 738 58.7
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.8e-213 746.9 944 49.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.3e-208 730.7 648 61.7
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 4.1e-202 709.1 927 48.0
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 9.6e-199 698.0 738 54.3
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.2e-196 691.0 648 61.6
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 4.9e-195 685.6 697 54.4
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 8.1e-190 668.3 486 72.4
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 7.4e-167 592.0 578 58.5
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.7e-147 527.7 411 67.4
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.1e-143 515.0 576 54.0
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.2e-142 510.8 537 59.0
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 8.2e-142 508.8 911 39.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.3e-136 490.7 941 37.1
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.8e-128 464.5 633 45.2
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.2e-121 441.8 921 34.7
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 9.2e-117 425.6 340 69.7
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 3.8e-115 420.2 349 62.2
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.5e-114 418.3 894 35.1
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.8e-109 401.4 565 48.3
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 8.6e-107 392.5 298 71.5
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 2.8e-105 387.5 923 32.6
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 8.9e-104 382.5 447 54.1
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 4.9e-102 376.7 441 52.6
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.7e-100 370.9 613 41.1
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.0e-83 314.3 197 82.7
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.1e-82 312.4 681 36.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.9e-74 285.0 226 69.5
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 3.4e-71 274.2 259 62.9
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 7.1e-69 266.5 273 53.8
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-67 261.2 573 34.6
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.1e-66 259.2 260 55.8
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.4e-64 252.3 201 66.2
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.3e-57 229.2 151 74.8
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.7e-54 218.8 153 72.5
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.3e-51 208.4 585 33.8
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 6.3e-49 200.3 136 75.0
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 5.0e-46 190.7 157 60.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 3.8e-38 164.5 132 62.9
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.4e-37 162.5 103 78.6
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.2e-33 148.7 195 47.2
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.5e-30 137.1 195 40.0
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.4e-29 136.0 224 37.5
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.8e-25 120.9 112 52.7
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 3.6e-20 104.8 85 68.2
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.8e-19 102.4 113 53.1
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 5.2e-19 100.9 106 53.8
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.2e-18 99.8 84 70.2
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 9.7e-18 96.7 82 68.3
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 1.4e-16 92.8 58 75.9
Cfa010972 Carpinus fangiana HOM05D011957 ORTHO05D012090 1.8e-16 92.4 79 64.6
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 9.4e-13 80.1 131 42.7
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 6.1e-12 77.4 131 41.2
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.0e-11 76.6 91 46.2
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 4.4e-10 71.2 88 44.3
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 4.1e-08 64.7 468 22.2
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 2.0e-07 62.4 239 25.9
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 1.7e-06 59.3 181 30.4
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 1.7e-06 59.3 88 39.8
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 6.5e-06 57.4 89 38.2


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