Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.2e-80 303.1 150 100.0
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 1.4e-30 136.7 88 84.1
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.9e-30 136.3 88 84.1
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 4.2e-30 135.2 88 81.8
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 2.4e-25 119.4 89 75.3
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 9.0e-25 117.5 91 65.9
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 4.5e-24 115.2 88 68.2
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 4.5e-24 115.2 88 67.0
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 3.8e-23 112.1 88 67.0
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 6.5e-23 111.3 88 65.9
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 8.4e-23 110.9 87 66.7
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 1.4e-22 110.2 89 66.3
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 1.4e-22 110.2 87 63.2
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 5.5e-22 108.2 88 67.0
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 5.5e-22 108.2 88 67.0
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 5.5e-22 108.2 88 60.2
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 5.5e-22 108.2 87 62.1
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 9.3e-22 107.5 88 62.5
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 1.2e-21 107.1 87 60.9
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 1.2e-21 107.1 87 60.9
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 1.6e-21 106.7 90 60.0
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 3.5e-21 105.5 90 58.9
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 6.0e-21 104.8 87 59.8
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 7.9e-21 104.4 89 61.8
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 7.9e-21 104.4 87 63.2
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 1.0e-20 104.0 88 63.6
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 1.0e-20 104.0 88 61.4
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 1.0e-20 104.0 88 58.0
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 1.0e-20 104.0 88 62.5
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 1.8e-20 103.2 87 60.9
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 1.8e-20 103.2 88 61.4
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 1.8e-20 103.2 87 62.1
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 1.8e-20 103.2 91 60.4
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 1.8e-20 103.2 87 59.8
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 1.8e-20 103.2 87 56.3
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 2.3e-20 102.8 87 57.5
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 3.0e-20 102.4 87 62.1
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 3.0e-20 102.4 88 61.4
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 3.0e-20 102.4 81 66.7
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 5.1e-20 101.7 86 62.8
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 5.1e-20 101.7 90 58.9
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 6.7e-20 101.3 88 61.4
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 6.7e-20 101.3 88 60.2
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 8.7e-20 100.9 88 62.5
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 8.7e-20 100.9 88 62.5
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 8.7e-20 100.9 88 63.6
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 8.7e-20 100.9 88 59.1
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 8.7e-20 100.9 86 64.0
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 1.1e-19 100.5 88 58.0
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 1.1e-19 100.5 87 57.5
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 1.5e-19 100.1 88 61.4
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 1.5e-19 100.1 88 58.0
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 1.5e-19 100.1 91 56.0
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 1.9e-19 99.8 88 59.1
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 3.3e-19 99.0 88 58.0
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 3.3e-19 99.0 88 60.2
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 4.3e-19 98.6 106 54.7
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 7.4e-19 97.8 88 56.8
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 7.4e-19 97.8 88 56.8
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 9.7e-19 97.4 90 56.7
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 1.3e-18 97.1 92 53.3
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 1.6e-18 96.7 88 58.0
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 2.2e-18 96.3 87 56.3
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 2.2e-18 96.3 88 59.1
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 2.2e-18 96.3 88 58.0
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 2.8e-18 95.9 87 57.5
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 3.7e-18 95.5 112 50.0
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 4.8e-18 95.1 88 59.1
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 1.1e-17 94.0 85 56.5
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 1.1e-17 94.0 98 52.0
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 1.8e-17 93.2 113 47.8
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 2.4e-17 92.8 88 56.8
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 1.5e-16 90.1 87 52.9
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 2.6e-16 89.4 74 64.9
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 1.3e-15 87.0 87 51.7
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 1.3e-15 87.0 85 54.1
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 2.9e-15 85.9 87 51.7
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 2.9e-15 85.9 87 51.7
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 2.9e-15 85.9 87 51.7
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 2.9e-15 85.9 87 55.2
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 2.9e-15 85.9 87 55.2
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 1.9e-14 83.2 87 52.9
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 2.5e-14 82.8 88 51.1
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 2.5e-14 82.8 42 95.2
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 2.5e-14 82.8 87 52.9
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 3.2e-14 82.4 81 54.3
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 1.2e-13 80.5 89 50.6
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 1.6e-13 80.1 86 51.2
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 2.1e-13 79.7 87 50.6
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 2.1e-13 79.7 79 57.0
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 4.6e-13 78.6 43 83.7
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 1.8e-12 76.6 76 56.6
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 8.8e-12 74.3 87 48.3
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 8.8e-12 74.3 87 48.3
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 8.8e-12 74.3 87 48.3
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 1.3e-10 70.5 74 52.7
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 1.1e-09 67.4 42 69.0
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 1.8e-09 66.6 88 42.0
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 1.8e-09 66.6 83 41.0
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 3.1e-09 65.9 62 59.7
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 6.9e-09 64.7 75 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 1.2e-08 63.9 87 35.6
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 1.2e-08 63.9 83 39.8
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 1.5e-08 63.5 85 38.8
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 5.9e-08 61.6 83 37.3
Ca_06796_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 1.0e-07 60.8 68 50.0
MELO3C032324.2 Cucumis melo HOM05D006886 ORTHO05D008494 1.0e-07 60.8 43 60.5
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 4.2e-06 55.5 41 56.1


User provided reference genes

Program Settings