Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1893.2 958 100.0
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 8.5e-52 209.9 1034 24.5
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 1.4e-49 202.6 1042 22.8
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 2.6e-48 198.4 1049 23.8
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 3.4e-48 198.0 1024 23.0
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 4.4e-48 197.6 1029 23.2
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 4.4e-48 197.6 1033 22.7
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 7.5e-48 196.8 1029 23.1
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.4e-46 192.6 1027 22.6
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.4e-46 192.6 1022 23.4
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 2.4e-46 191.8 1034 22.6
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 2.4e-46 191.8 1033 23.0
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.1e-46 191.4 1031 23.3
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 3.1e-46 191.4 1030 23.0
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 5.4e-46 190.7 1028 23.1
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 9.1e-46 189.9 1025 22.2
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 9.1e-46 189.9 1024 22.6
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.7e-45 188.3 1027 23.4
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 3.5e-45 188.0 1026 23.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 3.5e-45 188.0 1045 22.2
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 7.7e-45 186.8 1045 22.2
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 7.7e-45 186.8 1027 23.4
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.3e-44 186.0 1014 22.5
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 1.3e-44 186.0 1023 22.8
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.7e-44 185.7 962 23.5
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 2.2e-44 185.3 1027 23.1
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 2.9e-44 184.9 1036 23.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 3.8e-44 184.5 1021 23.0
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 3.8e-44 184.5 1030 22.2
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 5.0e-44 184.1 1039 22.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 6.5e-44 183.7 1027 22.4
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 2.5e-43 181.8 1053 22.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 3.2e-43 181.4 1026 22.9
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.2e-43 181.4 1024 22.8
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 5.5e-43 180.6 1041 22.4
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 7.2e-43 180.3 1025 21.7
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 9.4e-43 179.9 1028 22.3
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 9.4e-43 179.9 1026 20.9
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 9.4e-43 179.9 1045 22.8
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.2e-42 179.5 948 23.3
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 1.6e-42 179.1 1031 22.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 1.6e-42 179.1 1037 21.9
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 2.1e-42 178.7 1025 22.0
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.1e-42 178.7 1053 22.8
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 2.1e-42 178.7 1029 22.3
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.1e-42 178.7 1034 22.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 2.7e-42 178.3 1026 22.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.6e-42 177.9 630 25.6
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 3.6e-42 177.9 1031 22.8
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 3.6e-42 177.9 1039 21.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 3.6e-42 177.9 1030 22.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.7e-42 177.6 1045 22.1
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 4.7e-42 177.6 1040 21.7
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 6.1e-42 177.2 1035 22.6
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 6.1e-42 177.2 1028 22.2
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 8.0e-42 176.8 1055 22.1
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 8.0e-42 176.8 1053 22.9
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 8.0e-42 176.8 1051 22.7
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 1.0e-41 176.4 1034 21.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.0e-41 176.4 1036 21.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 1.4e-41 176.0 1029 22.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 1.4e-41 176.0 1025 22.0
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 1.8e-41 175.6 1025 22.3
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 1.8e-41 175.6 1028 21.4
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 2.3e-41 175.3 1032 21.8
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.3e-41 175.3 1033 21.4
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 2.3e-41 175.3 1054 22.5
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 3.0e-41 174.9 1028 22.3
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 3.0e-41 174.9 1032 21.8
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 3.0e-41 174.9 1031 21.2
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 5.2e-41 174.1 1039 21.8
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.2e-41 174.1 1034 21.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 5.2e-41 174.1 1032 22.6
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 6.8e-41 173.7 1019 22.1
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 6.8e-41 173.7 1030 21.9
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 6.8e-41 173.7 1031 23.0
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.2e-40 172.9 1028 24.8
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 1.2e-40 172.9 1032 21.6
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-40 172.6 1034 21.4
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 1.5e-40 172.6 1009 22.4
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 1.5e-40 172.6 1045 22.7
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 1.5e-40 172.6 1025 22.1
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 2.0e-40 172.2 1022 21.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 2.6e-40 171.8 1040 21.5
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 3.4e-40 171.4 1042 22.7
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 4.4e-40 171.0 1046 21.8
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 7.5e-40 170.2 1022 21.9
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 7.5e-40 170.2 1051 22.5
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 9.8e-40 169.9 1041 21.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.3e-39 169.5 1036 23.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 1.7e-39 169.1 1040 21.8
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 1.7e-39 169.1 1029 21.9
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 2.2e-39 168.7 1022 21.6
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.7e-39 167.9 1033 21.3
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 3.7e-39 167.9 1055 22.1
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 3.1e-38 164.9 1040 21.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 4.1e-38 164.5 1046 21.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 5.4e-38 164.1 1057 20.6
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.6e-36 156.8 1033 22.0
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.6e-35 154.1 469 27.1
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 5.2e-33 147.5 319 30.1
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 8.9e-33 146.7 321 30.2
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.2e-32 146.4 336 30.1
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 2.6e-32 145.2 360 27.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 2.6e-32 145.2 319 29.5
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.4e-32 144.8 323 31.0
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 4.4e-32 144.4 345 29.6
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.3e-31 142.9 396 29.0
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.3e-31 142.9 396 29.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 1.7e-31 142.5 337 29.4
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.7e-31 142.5 322 29.8
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 2.2e-31 142.1 322 31.1
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 2.9e-31 141.7 1047 20.7
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 2.9e-31 141.7 361 30.2
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 3.7e-31 141.4 312 31.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 1.4e-30 139.4 333 27.3
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 1.4e-30 139.4 336 30.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.4e-30 139.4 336 30.1
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.2e-30 138.3 337 28.2
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 3.2e-30 138.3 315 30.8
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 3.2e-30 138.3 315 30.8
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 5.4e-30 137.5 323 29.1
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 7.0e-30 137.1 337 30.6
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 9.2e-30 136.7 337 29.1
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 1.2e-29 136.3 336 29.5
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 1.6e-29 136.0 337 29.7
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.0e-29 135.6 307 30.9
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 5.9e-29 134.0 1030 20.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 7.8e-29 133.7 307 30.9
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.7e-28 132.5 340 29.4
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 2.9e-28 131.7 306 30.1
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 6.6e-28 130.6 306 28.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 6.6e-28 130.6 341 27.9
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 8.6e-28 130.2 341 27.9
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 8.6e-28 130.2 297 31.3
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 8.0e-26 123.6 352 29.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 3.1e-25 121.7 297 30.3
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.2e-21 109.8 165 37.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.2e-16 93.2 132 40.9
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.1e-14 84.7 131 33.6
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 9.2e-14 83.6 127 33.9
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 5.1e-12 77.8 226 33.2
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 4.3e-11 74.7 131 32.8
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 3.1e-09 68.6 84 40.5
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-08 65.5 122 34.4
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 8.4e-07 60.5 82 36.6
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 8.4e-07 60.5 115 32.2


User provided reference genes

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