Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023232 Carpinus fangiana HOM05D003679 ORTHO05D004265 0.0e+00 1384.8 728 100.0
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 2.0e-29 135.2 537 25.1
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 7.7e-29 133.3 528 23.7
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 7.7e-29 133.3 539 25.0
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 1.3e-28 132.5 540 24.4
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 2.9e-28 131.3 539 23.2
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 1.5e-27 129.0 537 24.2
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 7.2e-27 126.7 525 23.8
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 1.6e-26 125.6 541 23.8
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 2.1e-26 125.2 558 23.3
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 6.1e-26 123.6 533 22.9
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 6.1e-26 123.6 556 23.2
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 8.0e-26 123.2 520 23.3
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 1.4e-25 122.5 534 22.5
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 1.4e-25 122.5 536 23.3
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 1.8e-25 122.1 530 23.0
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 2.3e-25 121.7 537 24.8
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 2.3e-25 121.7 533 23.3
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 2.3e-25 121.7 540 23.5
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 2.3e-25 121.7 536 23.7
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 2.3e-25 121.7 539 24.3
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 2.3e-25 121.7 540 22.8
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 2.3e-25 121.7 536 23.5
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 3.0e-25 121.3 542 22.7
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 3.0e-25 121.3 518 23.6
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 3.0e-25 121.3 540 23.7
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 5.2e-25 120.6 533 23.1
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 6.7e-25 120.2 542 23.4
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 6.7e-25 120.2 528 24.1
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 6.7e-25 120.2 539 23.6
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 8.8e-25 119.8 534 24.0
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 8.8e-25 119.8 536 23.1
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 8.8e-25 119.8 540 23.7
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 1.2e-24 119.4 543 23.9
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 1.2e-24 119.4 535 23.6
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.2e-24 119.4 541 23.5
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.2e-24 119.4 539 23.4
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 1.2e-24 119.4 541 22.9
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 1.5e-24 119.0 543 23.6
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.5e-24 119.0 536 23.1
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 2.0e-24 118.6 524 22.9
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 2.6e-24 118.2 539 24.5
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 2.6e-24 118.2 528 23.1
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 3.3e-24 117.9 526 22.6
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 5.7e-24 117.1 533 23.3
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 5.7e-24 117.1 602 23.1
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 5.7e-24 117.1 535 22.6
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 9.7e-24 116.3 534 23.6
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 9.7e-24 116.3 596 23.5
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 1.3e-23 115.9 539 22.3
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 1.7e-23 115.5 533 23.1
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 1.7e-23 115.5 524 22.5
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 1.7e-23 115.5 781 23.7
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 2.2e-23 115.2 540 23.3
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 2.2e-23 115.2 539 21.7
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 2.2e-23 115.2 529 22.1
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 2.2e-23 115.2 540 22.8
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 2.2e-23 115.2 523 21.6
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 2.2e-23 115.2 548 22.4
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 2.8e-23 114.8 528 22.9
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 2.8e-23 114.8 528 22.9
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 2.8e-23 114.8 528 22.9
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 2.8e-23 114.8 539 23.2
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 3.7e-23 114.4 524 23.1
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 6.3e-23 113.6 730 22.9
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 6.3e-23 113.6 541 22.9
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 6.3e-23 113.6 794 24.2
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 8.3e-23 113.2 532 23.9
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.1e-22 112.8 622 22.5
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 1.1e-22 112.8 756 23.1
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.4e-22 112.5 622 22.5
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 1.8e-22 112.1 275 29.5
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 1.8e-22 112.1 796 24.2
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 2.4e-22 111.7 536 22.2
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 2.4e-22 111.7 742 23.6
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 3.1e-22 111.3 493 24.1
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 7.0e-22 110.2 792 22.1
Nn1g09907 Nelumbo nucifera HOM05D003679 ORTHO05D004265 9.1e-22 109.8 503 23.9
Gohir.A08G230600 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.2e-21 109.4 614 22.1
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 3.5e-21 107.8 776 22.7
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 5.9e-21 107.1 521 23.0
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 7.7e-21 106.7 271 29.2
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 7.7e-21 106.7 817 22.8
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 7.7e-21 106.7 598 24.1
vmacro11031 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 7.7e-21 106.7 327 26.9
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 1.0e-20 106.3 768 22.0
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 1.0e-20 106.3 570 22.3
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 1.0e-20 106.3 785 23.3
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 1.3e-20 105.9 462 23.8
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 1.3e-20 105.9 812 23.4
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 1.3e-20 105.9 474 26.4
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 1.3e-20 105.9 474 26.4
SEGI_13301 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 1.7e-20 105.5 306 27.1
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 2.2e-20 105.1 299 26.8
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 2.9e-20 104.8 771 21.7
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 3.8e-20 104.4 799 23.3
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 5.0e-20 104.0 769 22.8
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 5.0e-20 104.0 795 21.5
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 5.0e-20 104.0 735 21.9
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 1.1e-19 102.8 812 23.3
Atru.chr13.2527 Acer truncatum HOM05D003679 ORTHO05D004265 1.5e-19 102.4 273 27.5
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 1.5e-19 102.4 789 21.5
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.5e-19 102.4 521 22.5
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 1.5e-19 102.4 807 22.3
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 1.9e-19 102.1 801 21.7
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 1.9e-19 102.1 797 22.7
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 3.2e-19 101.3 789 21.4
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 3.2e-19 101.3 805 22.0
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 4.2e-19 100.9 772 22.0
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 5.5e-19 100.5 757 22.5
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 7.2e-19 100.1 760 22.5
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 7.2e-19 100.1 783 21.3
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 7.2e-19 100.1 327 26.3
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 9.4e-19 99.8 781 23.4
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 1.2e-18 99.4 780 21.5
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 1.2e-18 99.4 828 22.9
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 1.6e-18 99.0 780 22.4
FAN06G3180 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.6e-18 99.0 324 25.6
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 2.1e-18 98.6 803 22.3
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 2.1e-18 98.6 803 22.3
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 2.1e-18 98.6 810 21.1
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.1e-18 98.6 792 22.5
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 2.7e-18 98.2 308 26.0
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 3.6e-18 97.8 791 21.6
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 4.7e-18 97.4 753 21.2
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 1.0e-17 96.3 801 21.8
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 1.4e-17 95.9 796 21.9
CBR_g8679 Chara braunii HOM05D003679 ORTHO05D004265 1.4e-17 95.9 387 25.3
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 1.8e-17 95.5 805 22.2
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 2.3e-17 95.1 804 22.1
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 3.0e-17 94.7 799 21.7
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 8.8e-17 93.2 815 22.2
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 1.5e-16 92.4 788 20.8
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 1.5e-16 92.4 603 22.9
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 2.0e-16 92.0 794 21.8
CBR_g22378 Chara braunii HOM05D003679 ORTHO05D004265 2.6e-16 91.7 745 22.4
Cc02_g28270 Coffea canephora HOM05D003679 ORTHO05D004265 3.4e-16 91.3 272 27.2
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 3.4e-16 91.3 819 22.6
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 3.4e-16 91.3 802 22.7
Pp3c15_10870 Physcomitrium patens HOM05D003679 ORTHO05D004265 5.7e-16 90.5 435 22.8
Pp3c9_3750 Physcomitrium patens HOM05D003679 ORTHO05D004265 2.2e-15 88.6 802 21.7
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 1.4e-14 85.9 448 21.4
MCO04G527 Micromonas commoda HOM05D003679 ORTHO05D004265 1.4e-14 85.9 195 29.2
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.8e-14 85.5 799 22.3
Cre03.g206900 Chlamydomonas reinhardtii HOM05D003679 ORTHO05D004265 7.0e-14 83.6 239 26.4
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 7.0e-14 83.6 792 21.6
MBI07_g03169_MAGBIO Magnolia biondii HOM05D003679 ORTHO05D004265 1.2e-13 82.8 780 22.8
Manes.18G113450 Manihot esculenta HOM05D003679 ORTHO05D004265 1.2e-13 82.8 347 24.5
PRCOL_00006428 Prasinoderma coloniale HOM05D003679 ORTHO05D004265 2.1e-10 72.0 332 23.5
Nn1g04396 Nelumbo nucifera HOM05D003679 ORTHO05D004265 2.3e-09 68.6 506 20.8
Duzib235G1025 Durio zibethinus HOM05D003679 ORTHO05D004265 2.0e-08 65.5 178 23.0
Duzib248G0388 Durio zibethinus HOM05D003679 ORTHO05D004265 6.3e-07 60.5 148 26.4
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 6.3e-07 60.5 489 22.5
FAN24G3386 Fragaria x ananassa HOM05D000137 ORTHO05D046242 1.8e-06 58.9 139 29.5
FvH4_2g16890 Fragaria vesca HOM05D000137 ORTHO05D046242 7.0e-06 57.0 126 30.2


User provided reference genes

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