Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 0.0e+00 1153.3 635 100.0
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.6e-54 218.4 503 35.8
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 5.1e-53 213.4 503 35.2
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.4e-50 205.3 507 34.1
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.4e-50 205.3 517 32.3
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.4e-50 205.3 504 33.3
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 2.4e-50 204.5 506 34.8
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 5.3e-50 203.4 506 33.8
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 9.0e-50 202.6 505 33.9
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 1.2e-49 202.2 504 33.5
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.2e-49 202.2 515 33.2
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.5e-49 201.8 508 34.3
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.4e-49 200.7 504 32.7
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 4.5e-49 200.3 504 32.3
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 4.5e-49 200.3 504 32.3
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 7.6e-49 199.5 505 33.9
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.0e-48 199.1 504 32.1
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.3e-48 198.7 533 33.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.3e-48 198.7 508 33.3
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.7e-48 198.4 535 33.3
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.7e-48 198.4 516 34.3
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 2.2e-48 198.0 524 32.8
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 2.2e-48 198.0 504 33.5
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 2.2e-48 198.0 517 33.1
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 3.8e-48 197.2 500 32.4
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.9e-48 196.8 504 32.9
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 4.9e-48 196.8 504 33.3
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 4.9e-48 196.8 497 33.4
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 6.5e-48 196.4 504 33.1
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 6.5e-48 196.4 504 33.3
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 8.4e-48 196.1 504 33.5
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 8.4e-48 196.1 516 32.9
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.1e-47 195.7 506 34.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.1e-47 195.7 523 33.5
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.1e-47 195.7 496 32.9
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.1e-47 195.7 496 32.9
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.4e-47 195.3 500 33.2
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.5e-47 194.5 504 33.7
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 2.5e-47 194.5 526 32.9
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 3.2e-47 194.1 497 32.8
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.2e-47 194.1 512 32.4
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 3.2e-47 194.1 504 33.5
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 3.2e-47 194.1 504 32.7
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 4.2e-47 193.7 504 32.5
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 5.5e-47 193.4 506 33.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 5.5e-47 193.4 504 32.9
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 9.3e-47 192.6 501 33.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.6e-46 191.8 504 33.1
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 2.1e-46 191.4 509 31.6
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 2.7e-46 191.0 504 32.9
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 2.7e-46 191.0 504 32.5
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.7e-46 191.0 505 33.1
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 3.5e-46 190.7 507 32.7
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.5e-46 190.7 516 32.4
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 6.0e-46 189.9 498 33.3
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 7.9e-46 189.5 462 33.3
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 7.9e-46 189.5 502 32.1
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.0e-45 189.1 539 33.6
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 1.0e-45 189.1 464 34.5
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.3e-45 188.7 512 32.2
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.8e-45 188.3 523 31.4
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.8e-45 188.3 503 32.6
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.3e-45 188.0 523 32.3
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 2.3e-45 188.0 512 32.2
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.0e-45 187.6 556 31.3
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 3.0e-45 187.6 497 32.4
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 3.9e-45 187.2 502 32.5
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.9e-45 187.2 460 33.9
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 3.9e-45 187.2 470 33.4
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.9e-45 187.2 521 32.2
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 6.7e-45 186.4 519 32.6
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 8.7e-45 186.0 497 32.4
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 8.7e-45 186.0 511 32.1
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.5e-44 185.3 504 32.1
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 1.9e-44 184.9 522 31.8
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 4.3e-44 183.7 496 32.1
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 4.3e-44 183.7 496 32.1
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.7e-44 183.3 425 34.6
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 7.4e-44 183.0 507 32.7
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 9.7e-44 182.6 572 30.4
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 9.7e-44 182.6 336 38.1
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 1.3e-43 182.2 529 31.6
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.3e-43 182.2 496 32.1
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.6e-43 181.8 502 31.7
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 2.2e-43 181.4 393 35.1
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 4.8e-43 180.3 393 35.1
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 8.2e-43 179.5 509 32.2
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 8.2e-43 179.5 499 32.7
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 1.1e-42 179.1 343 37.6
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.4e-42 178.7 500 32.6
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.8e-42 178.3 457 34.4
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.1e-42 177.6 524 32.3
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 6.9e-42 176.4 496 32.9
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.2e-41 175.6 503 32.0
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.5e-41 175.3 510 32.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 2.6e-41 174.5 351 36.5
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.4e-41 174.1 495 32.9
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 7.7e-41 172.9 587 29.8
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.0e-40 172.6 478 32.2
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.7e-40 171.8 334 35.3
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 6.5e-40 169.9 495 32.5
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.9e-39 168.3 495 32.3
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 2.5e-39 167.9 510 32.4
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 9.4e-39 166.0 457 33.3
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 4.6e-38 163.7 504 29.8
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.3e-35 155.6 507 31.2
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 2.7e-30 137.9 482 29.9
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 6.3e-27 126.7 371 32.9
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 3.9e-21 107.5 394 27.9
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 8.2e-19 99.8 226 33.6
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 2.2e-16 91.7 324 30.2
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.2e-11 75.1 274 29.9
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.2e-08 65.1 112 38.4
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.8e-08 64.3 277 27.1
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.8e-08 64.3 318 25.5


User provided reference genes

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