Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.1e-95 352.4 185 100.0
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 8.4e-81 303.9 225 77.3
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.7e-73 279.6 186 81.7
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 2.3e-70 269.2 187 78.6
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 5.5e-64 248.1 189 73.5
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 7.1e-64 247.7 193 73.6
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 7.1e-64 247.7 192 73.4
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 5.6e-61 238.0 193 71.5
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 1.6e-60 236.5 181 76.2
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 2.8e-60 235.7 189 72.0
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 8.1e-60 234.2 190 71.6
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 2.4e-59 232.6 174 75.3
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 6.9e-59 231.1 189 72.0
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 4.5e-58 228.4 195 66.7
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 2.9e-57 225.7 189 68.8
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 1.1e-56 223.8 194 68.0
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 1.4e-56 223.4 186 68.8
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.2e-55 220.3 191 67.0
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.1e-55 219.5 176 72.7
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 1.8e-54 216.5 187 67.4
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 3.0e-54 215.7 197 67.0
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 5.1e-54 214.9 151 76.2
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 5.1e-54 214.9 180 70.0
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 8.7e-54 214.2 180 70.6
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.1e-53 213.8 188 65.4
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.5e-53 213.4 151 75.5
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 1.5e-53 213.4 189 68.8
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 2.5e-53 212.6 180 69.4
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.1e-52 209.5 170 70.6
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 4.8e-52 208.4 188 67.6
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 6.3e-52 208.0 184 64.7
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 6.3e-52 208.0 190 65.8
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 6.3e-52 208.0 168 70.2
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 8.2e-52 207.6 188 66.0
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.2e-52 207.6 170 71.2
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.1e-51 207.2 186 67.2
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 1.1e-51 207.2 190 66.3
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 1.4e-51 206.8 122 86.1
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 1.4e-51 206.8 195 63.6
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 1.8e-51 206.5 191 63.4
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 1.8e-51 206.5 186 67.2
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 3.1e-51 205.7 188 66.0
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 5.3e-51 204.9 176 68.2
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 6.9e-51 204.5 189 67.2
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 1.2e-50 203.8 155 72.3
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 1.2e-50 203.8 185 64.9
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.5e-50 203.4 186 67.2
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 2.0e-50 203.0 190 63.2
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 4.5e-50 201.8 186 62.4
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 5.9e-50 201.4 193 65.3
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 1.0e-49 200.7 151 71.5
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 1.3e-49 200.3 192 64.1
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 2.2e-49 199.5 185 62.7
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 2.2e-49 199.5 185 64.9
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 8.5e-49 197.6 151 74.8
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 3.2e-48 195.7 166 68.1
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 9.3e-48 194.1 184 64.1
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 1.6e-47 193.4 183 65.0
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 2.1e-47 193.0 123 83.7
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 2.1e-47 193.0 189 61.9
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.7e-47 192.6 205 62.0
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 4.6e-47 191.8 219 56.6
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 6.1e-47 191.4 167 67.1
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 6.1e-47 191.4 191 62.3
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 6.7e-46 188.0 194 63.9
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.9e-45 186.4 191 63.9
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 1.3e-44 183.7 152 71.7
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.6e-44 183.3 140 72.9
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 2.2e-44 183.0 190 61.6
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 2.2e-44 183.0 190 61.6
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 2.2e-44 183.0 190 61.6
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.2e-44 183.0 144 70.8
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 1.8e-43 179.9 148 68.2
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 9.1e-43 177.6 195 60.0
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.2e-42 177.2 145 70.3
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 2.6e-42 176.0 120 82.5
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 5.9e-42 174.9 193 60.1
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.9e-42 174.9 123 77.2
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 7.7e-42 174.5 182 62.6
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 1.0e-41 174.1 182 56.6
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.3e-41 173.7 171 64.3
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 1.7e-41 173.3 124 79.0
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 3.8e-41 172.2 148 65.5
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 6.5e-41 171.4 193 57.0
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 6.5e-41 171.4 122 77.9
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 1.4e-40 170.2 148 68.9
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 7.2e-40 167.9 200 56.5
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 4.6e-39 165.2 98 86.7
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 5.3e-35 151.8 119 70.6
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 5.3e-35 151.8 86 87.2
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.9e-35 151.4 180 56.7
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 3.4e-34 149.1 100 80.0
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 4.5e-34 148.7 155 60.6
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 4.5e-34 148.7 155 60.6
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 1.7e-33 146.7 164 54.3
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 7.2e-32 141.4 156 57.7
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 3.6e-31 139.0 156 53.2
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 1.4e-30 137.1 145 58.6
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 8.8e-30 134.4 137 56.2
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.4e-29 132.1 112 70.5
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 4.8e-28 128.6 93 75.3
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 9.1e-27 124.4 154 53.2
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 9.1e-27 124.4 157 49.7
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 3.5e-26 122.5 124 58.1
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 5.9e-26 121.7 120 60.0
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.5e-24 117.1 81 76.5
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.3e-22 109.8 80 75.0
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.3e-22 109.8 80 75.0
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 2.4e-19 99.8 121 50.4
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 4.5e-18 95.5 135 40.7
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.5e-17 91.3 111 49.5
Duzib130G0001 Durio zibethinus HOM05D006899 ORTHO05D008566 2.5e-16 89.7 89 66.3
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 4.2e-16 89.0 80 63.8
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 4.7e-15 85.5 122 42.6
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 7.0e-11 71.6 89 47.2
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 1.3e-09 67.4 69 43.5


User provided reference genes

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