Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 2.0e-32 141.7 68 100.0
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 2.0e-32 141.7 68 100.0
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 8.0e-21 103.2 67 76.1
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.8e-20 102.1 67 76.1
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 4.0e-20 100.9 68 75.0
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 5.2e-20 100.5 67 71.6
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 3.4e-19 97.8 67 70.1
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.4e-19 97.8 67 70.1
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.4e-19 97.8 67 70.1
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 3.4e-19 97.8 66 71.2
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 4.4e-19 97.4 72 70.8
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 7.5e-19 96.7 71 67.6
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.7e-18 95.5 67 71.6
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.7e-18 95.5 63 68.3
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 3.7e-18 94.4 69 62.3
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 4.8e-18 94.0 72 75.0
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.8e-17 92.0 69 65.2
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 3.1e-17 91.3 70 65.7
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 3.1e-17 91.3 70 71.4
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 9.1e-17 89.7 70 72.9
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 1.2e-16 89.4 65 67.7
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.0e-16 88.6 70 71.4
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.5e-16 87.8 70 65.7
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.8e-15 84.3 72 65.3
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 6.5e-15 83.6 71 59.2
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 6.5e-15 83.6 71 59.2
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 6.5e-15 83.6 65 70.8
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.5e-14 80.5 70 58.6
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.4e-14 79.7 69 59.4
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 9.4e-14 79.7 69 59.4
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 1.2e-13 79.3 68 57.4
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-13 79.0 66 60.6
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 1.6e-13 79.0 68 66.2
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.1e-13 78.6 70 57.1
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.7e-13 78.2 70 54.3
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.7e-13 77.4 71 59.2
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.7e-13 77.4 69 55.1
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 8.0e-13 76.6 70 55.7
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.0e-12 74.7 67 56.7
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 3.0e-12 74.7 71 52.1
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 3.0e-12 74.7 54 70.4
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 4.0e-12 74.3 65 64.6
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 5.2e-12 73.9 48 66.7
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 6.8e-12 73.6 70 55.7
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 8.8e-12 73.2 59 55.9
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 8.8e-12 73.2 68 58.8
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.2e-11 72.8 73 57.5
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 2.0e-11 72.0 68 57.4
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.0e-11 72.0 54 64.8
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 2.6e-11 71.6 66 54.5
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 4.4e-11 70.9 48 68.8
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 4.4e-11 70.9 66 54.5
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 5.7e-11 70.5 71 52.1
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 5.7e-11 70.5 49 65.3
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 7.5e-11 70.1 63 58.7
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-10 69.3 71 56.3
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.7e-10 68.9 72 50.0
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.7e-10 68.9 68 52.9
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.8e-10 68.2 71 54.9
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.8e-10 68.2 71 54.9
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 3.7e-10 67.8 49 61.2
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 6.3e-10 67.0 47 63.8
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 6.3e-10 67.0 55 60.0
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.8e-09 65.5 70 45.7
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 2.4e-09 65.1 49 61.2
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 2.4e-09 65.1 55 60.0
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 3.1e-09 64.7 55 58.2
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 3.1e-09 64.7 55 58.2
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 3.1e-09 64.7 57 57.9
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 3.1e-09 64.7 75 52.0
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.1e-09 64.3 44 63.6
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 5.4e-09 63.9 66 54.5
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 7.0e-09 63.5 67 50.7
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 7.0e-09 63.5 73 47.9
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.0e-09 63.5 74 50.0
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 9.1e-09 63.2 46 63.0
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.1e-09 63.2 74 48.6
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.1e-09 63.2 74 50.0
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 9.1e-09 63.2 71 49.3
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 1.2e-08 62.8 47 61.7
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 1.2e-08 62.8 73 47.9
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.0e-08 62.0 56 55.4
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 2.0e-08 62.0 71 47.9
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 3.5e-08 61.2 73 46.6
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 3.5e-08 61.2 66 50.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 4.5e-08 60.8 70 48.6
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 4.5e-08 60.8 72 45.8
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 7.7e-08 60.1 62 46.8
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.3e-07 59.3 70 41.4
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 1.3e-07 59.3 58 43.1
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.3e-07 59.3 62 46.8
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.3e-07 59.3 67 47.8
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 1.7e-07 58.9 34 76.5
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.3e-07 58.5 46 56.5
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 2.9e-07 58.2 48 60.4
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 6.6e-07 57.0 56 51.8
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 8.6e-07 56.6 69 44.9
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 8.6e-07 56.6 58 50.0
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 1.1e-06 56.2 45 62.2
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 1.9e-06 55.5 71 42.3
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 1.9e-06 55.5 54 51.9
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 2.5e-06 55.1 70 40.0
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 2.5e-06 55.1 70 40.0
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 2.5e-06 55.1 41 51.2
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 3.3e-06 54.7 70 40.0
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 4.2e-06 54.3 69 44.9
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 5.5e-06 53.9 70 38.6
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 5.5e-06 53.9 70 38.6
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 5.5e-06 53.9 70 38.6
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 5.5e-06 53.9 54 48.1
Medtr1g018130 Medicago truncatula HOM05D004894 ORTHO05D005689 5.5e-06 53.9 66 47.0
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 7.2e-06 53.5 69 39.1
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 7.2e-06 53.5 69 39.1
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 7.2e-06 53.5 69 37.7
DCAR_007899 Daucus carota HOM05D006911 ORTHO05D006663 9.5e-06 53.1 38 57.9
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 9.5e-06 53.1 67 47.8


User provided reference genes

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