Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 8.5e-29 129.8 73 100.0
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.7e-24 115.5 74 94.6
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.1e-23 111.3 73 84.9
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-21 105.9 61 96.7
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.3e-21 105.9 61 96.7
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.5e-20 102.4 61 95.1
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.5e-20 101.7 63 92.1
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.6e-19 99.0 72 80.6
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 4.7e-19 97.4 72 80.6
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 6.1e-19 97.1 63 90.5
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.0e-18 94.7 61 88.5
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 5.2e-18 94.0 72 77.8
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 5.7e-17 90.5 63 79.4
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.5e-17 90.1 45 93.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.1e-15 84.3 78 73.1
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.0e-14 82.0 74 70.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.7e-13 79.0 73 61.6
Cfa021234 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.7e-13 79.0 47 87.2
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.3e-13 78.6 65 72.3
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.9e-13 78.2 74 68.9
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 3.3e-12 74.7 73 65.8
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 3.3e-12 74.7 73 65.8
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.3e-12 74.7 86 51.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 3.3e-12 74.7 75 66.7
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 3.3e-12 74.7 75 66.7
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 4.3e-12 74.3 74 67.6
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 4.3e-12 74.3 82 62.2
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 9.5e-12 73.2 74 66.2
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-11 72.8 74 68.9
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-11 72.8 74 68.9
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.6e-11 72.4 71 69.0
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.6e-11 72.4 74 68.9
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 2.1e-11 72.0 70 71.4
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.8e-11 71.6 74 67.6
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.8e-11 71.6 74 68.9
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.8e-11 71.6 70 64.3
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.8e-11 71.6 70 64.3
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-11 71.6 76 67.1
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 3.6e-11 71.2 76 67.1
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.7e-11 70.9 74 67.6
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 4.7e-11 70.9 79 63.3
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 4.7e-11 70.9 74 66.2
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 8.0e-11 70.1 64 65.6
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 8.0e-11 70.1 71 69.0
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.0e-10 69.7 73 67.1
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-10 69.7 78 62.8
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-10 69.7 78 62.8
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.4e-10 69.3 64 70.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.4e-10 69.3 64 70.3
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 67.1
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-10 69.3 77 64.9
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-10 68.9 74 63.5
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 3.1e-10 68.2 67 70.1
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 3.1e-10 68.2 67 70.1
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.1e-10 68.2 64 68.8
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.1e-10 68.2 74 60.8
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 4.0e-10 67.8 72 55.6
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.0e-10 67.8 77 55.8
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.0e-10 67.8 71 62.0
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 4.0e-10 67.8 57 73.7
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 5.2e-10 67.4 72 56.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.2e-10 67.4 69 66.7
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 6.8e-10 67.0 72 55.6
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 6.8e-10 67.0 74 62.2
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 6.8e-10 67.0 74 63.5
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 8.9e-10 66.6 66 69.7
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 8.9e-10 66.6 75 66.7
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 8.9e-10 66.6 72 62.5
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-09 66.2 72 62.5
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.2e-09 66.2 79 62.0
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.2e-09 66.2 72 58.3
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.5e-09 65.9 72 58.3
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.5e-09 65.9 72 58.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.5e-09 65.9 72 55.6
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.5e-09 65.9 72 58.3
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.5e-09 65.9 60 71.7
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.5e-09 65.9 54 72.2
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.5e-09 65.9 76 59.2
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 2.0e-09 65.5 67 62.7
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.0e-09 65.5 70 58.6
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.6e-09 65.1 64 65.6
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 3.4e-09 64.7 69 58.0
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.4e-09 64.3 61 65.6
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.4e-09 64.3 69 58.0
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 5.8e-09 63.9 58 60.3
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.8e-09 63.9 72 56.9
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 5.8e-09 63.9 72 56.9
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 5.8e-09 63.9 72 56.9
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.8e-09 63.9 73 58.9
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 5.8e-09 63.9 71 63.4
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 5.8e-09 63.9 65 61.5
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 7.5e-09 63.5 70 60.0
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 7.5e-09 63.5 76 64.5
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 7.5e-09 63.5 66 66.7
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.5e-09 63.5 74 62.2
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 9.8e-09 63.2 75 56.0
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 63.4
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 52.8
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 62.5
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 1.3e-08 62.8 73 63.0
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.3e-08 62.8 69 58.0
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.2e-08 62.0 69 58.0
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 2.2e-08 62.0 75 64.0
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.9e-08 61.6 62 64.5
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.9e-08 61.6 62 64.5
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.9e-08 61.6 54 66.7
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 2.9e-08 61.6 54 66.7
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.7e-08 61.2 71 63.4
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 4.9e-08 60.8 61 62.3
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.9e-08 60.8 56 69.6
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 4.9e-08 60.8 72 58.3
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 6.4e-08 60.5 73 60.3
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 8.3e-08 60.1 66 53.0
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 8.3e-08 60.1 66 60.6
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 8.3e-08 60.1 73 60.3
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 8.3e-08 60.1 60 70.0
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.3e-08 60.1 68 52.9
Haze_12229 Corylus avellana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 54 70.4
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.1e-07 59.7 69 59.4
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 58 56.9
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.4e-07 59.3 58 56.9
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.4e-07 59.3 75 50.7
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 76 53.9
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.4e-07 59.3 61 65.6
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.4e-07 59.3 71 59.2
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.9e-07 58.9 65 61.5
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 1.9e-07 58.9 48 62.5
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.9e-07 58.9 56 51.8
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.9e-07 58.9 73 56.2
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.9e-07 58.9 62 56.5
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.4e-07 58.5 74 51.4
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 2.4e-07 58.5 58 58.6
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.4e-07 58.5 58 58.6
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 3.2e-07 58.2 61 62.3
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.2e-07 58.2 57 57.9
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 3.2e-07 58.2 52 67.3
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.1e-07 57.8 72 54.2
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 4.1e-07 57.8 57 66.7
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 5.4e-07 57.4 65 60.0
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 5.4e-07 57.4 68 63.2
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 5.4e-07 57.4 73 53.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 5.4e-07 57.4 73 53.4
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 7.0e-07 57.0 55 54.5
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.0e-07 57.0 74 52.7
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 9.2e-07 56.6 68 57.4
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 9.2e-07 56.6 69 60.9
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 9.2e-07 56.6 75 52.0
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 9.2e-07 56.6 72 56.9
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 9.2e-07 56.6 58 60.3
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.2e-06 56.2 74 55.4
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 1.2e-06 56.2 72 52.8
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 73 52.1
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 69 52.2
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.2e-06 56.2 73 57.5
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.6e-06 55.8 58 65.5
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 1.6e-06 55.8 68 48.5
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 1.6e-06 55.8 77 54.5
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 2.0e-06 55.5 62 59.7
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-06 55.5 64 57.8
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 2.0e-06 55.5 66 47.0
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 2.0e-06 55.5 57 64.9
Sabra16G0021300 Salix brachista HOM05D002385 ORTHO05D002245 2.0e-06 55.5 56 58.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 2.7e-06 55.1 73 45.2
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.7e-06 55.1 72 51.4
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 3.5e-06 54.7 52 67.3
FAN05G0132 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-06 54.7 57 56.1
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 4.6e-06 54.3 69 49.3
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 4.6e-06 54.3 76 48.7
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 4.6e-06 54.3 54 59.3
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 6.0e-06 53.9 56 57.1
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 6.0e-06 53.9 73 57.5
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 6.0e-06 53.9 69 49.3
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.0e-06 53.9 67 61.2
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 6.0e-06 53.9 69 50.7
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 6.0e-06 53.9 73 60.3
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 7.8e-06 53.5 68 54.4
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 7.8e-06 53.5 70 58.6
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 7.8e-06 53.5 69 47.8
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 7.8e-06 53.5 73 45.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 7.8e-06 53.5 69 44.9
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 7.8e-06 53.5 76 53.9


User provided reference genes

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