Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.4e-251 872.5 428 100.0
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 8.6e-230 800.0 419 93.8
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 8.1e-228 793.5 422 93.8
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.7e-225 785.8 420 93.8
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 6.0e-223 777.3 418 93.5
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 7.8e-223 776.9 439 88.6
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-221 773.1 422 92.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-221 773.1 422 92.2
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.9e-221 772.3 423 92.0
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.9e-221 772.3 423 92.0
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 4.3e-221 771.2 422 91.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.4e-218 761.5 418 89.7
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.1e-211 738.4 452 83.8
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 3.4e-210 734.9 453 83.4
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.9e-210 733.4 475 79.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 6.4e-209 730.7 541 71.7
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.4e-209 730.7 579 67.5
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 3.9e-206 721.5 517 72.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.1e-203 713.4 623 63.6
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.3e-201 706.4 380 93.4
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.6e-194 680.6 579 64.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 2.9e-193 678.7 555 66.8
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 8.4e-185 650.6 486 71.2
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.9e-184 649.4 556 63.5
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 9.3e-184 647.1 425 79.1
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-183 646.0 340 92.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-182 642.5 461 72.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-169 599.7 447 71.8
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.5e-168 595.9 399 77.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-166 590.1 439 70.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.5e-160 569.3 613 54.6
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.8e-158 563.1 419 72.3
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-144 517.3 391 71.9
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.4e-139 500.4 421 65.8
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 4.7e-135 485.3 256 95.3
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.4e-131 473.8 256 93.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 4.1e-131 472.2 260 93.5
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 4.1e-131 472.2 260 93.5
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 4.1e-131 472.2 260 93.5
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 5.4e-131 471.9 256 93.0
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.5e-130 469.2 243 96.7
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-128 463.8 256 91.8
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.9e-128 463.4 260 91.9
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.6e-127 459.1 260 91.2
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 6.4e-124 448.4 247 93.5
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.3e-121 439.9 256 87.1
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-121 438.3 260 87.7
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-121 438.3 260 87.7
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 5.6e-120 435.3 239 93.7
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.2e-119 434.1 243 90.9
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-119 433.3 236 92.8
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 5.2e-118 428.7 256 85.9
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 5.2e-118 428.7 256 85.9
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 5.2e-118 428.7 256 85.9
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 5.2e-118 428.7 256 85.9
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 5.2e-118 428.7 256 85.9
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 5.2e-118 428.7 256 85.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-116 423.3 577 48.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 2.9e-116 422.9 245 89.0
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.4e-115 420.6 243 88.9
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 3.2e-115 419.5 243 89.7
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 7.0e-115 418.3 471 53.3
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 9.5e-112 407.9 256 84.8
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 5.2e-110 402.1 244 86.1
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-108 397.5 239 86.6
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-108 397.5 239 86.6
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.4e-107 394.0 214 88.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 4.1e-107 392.5 256 80.5
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.9e-105 386.0 247 83.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-104 384.0 195 93.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-104 384.0 195 93.8
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.2e-103 380.9 205 90.7
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 8.4e-100 368.2 239 81.6
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 7.8e-98 361.7 256 75.8
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 9.0e-94 348.2 189 93.1
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 3.8e-92 342.8 193 91.7
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 4.9e-92 342.4 201 89.1
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 5.4e-91 339.0 206 81.1
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 4.6e-90 335.9 175 93.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.3e-89 333.6 165 95.2
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 3.9e-89 332.8 179 95.5
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 9.6e-88 328.2 165 93.9
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 9.6e-88 328.2 165 93.9
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 9.6e-88 328.2 165 93.9
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-86 324.7 165 92.1
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-86 324.7 165 92.1
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-86 324.7 165 92.1
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.1e-86 324.7 165 93.3
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 9.9e-85 318.2 165 90.3
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 9.9e-85 318.2 166 91.6
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-81 307.4 247 70.9
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 1.5e-80 304.3 165 87.9
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.4e-78 297.0 175 83.4
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 5.8e-77 292.4 146 93.2
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 2.2e-76 290.4 163 86.5
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 8.4e-76 288.5 167 83.8
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 8.4e-76 288.5 167 83.8
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.7e-74 283.5 146 91.8
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.5e-74 283.1 231 68.0
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.3e-73 281.2 146 91.1
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-73 280.8 202 76.2
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.9e-72 277.3 188 74.5
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 4.8e-71 272.7 148 87.8
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.2e-69 268.1 143 88.8
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.5e-69 267.7 154 90.3
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 5.0e-68 262.7 124 96.8
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 1.6e-63 247.7 172 78.5
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.9e-62 242.3 243 58.0
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 3.8e-60 236.5 175 71.4
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.8e-55 220.3 109 89.9
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.6e-53 213.8 118 92.4
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.7e-52 211.1 105 94.3
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 3.8e-52 209.9 134 83.6
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 6.5e-52 209.1 111 87.4
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.2e-50 204.9 178 64.6
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.2e-50 204.9 178 64.6
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.8e-49 201.1 108 89.8
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.3e-49 200.7 181 58.0
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.1e-49 199.5 118 87.3
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-47 193.0 174 60.3
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.1e-46 191.8 107 90.7
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.5e-45 188.0 106 90.6
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-43 181.4 113 85.0
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.2e-43 179.9 158 65.2
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-42 177.2 150 62.7
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.6e-37 160.6 84 90.5
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.5e-37 160.2 96 85.4
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.7e-36 157.9 93 87.1
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 1.7e-36 157.9 93 86.0
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.8e-36 156.8 84 88.1
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.5e-35 154.1 79 91.1
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 6.1e-34 149.4 84 84.5
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.8e-31 140.6 76 92.1
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 2.8e-31 140.6 76 92.1
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 2.8e-31 140.6 76 92.1
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-30 137.9 188 44.7
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-30 137.5 113 66.4
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 2.9e-28 130.6 117 59.0
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 6.1e-26 122.9 69 87.0
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.0e-25 122.1 65 92.3
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.6e-24 117.5 59 96.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.1e-22 112.1 109 56.0
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.5e-21 106.7 59 88.1
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 8.6e-20 102.4 66 72.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-19 100.5 173 42.8
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.5e-19 99.8 54 83.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-17 95.1 53 86.8
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-16 90.9 125 40.8
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 3.4e-16 90.5 78 61.5
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-14 85.5 64 67.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 3.2e-14 84.0 46 84.8
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 4.1e-14 83.6 67 65.7
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-13 82.0 81 59.3
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 2.0e-13 81.3 68 61.8
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-12 78.6 53 66.0
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 1.7e-12 78.2 69 69.6
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.3e-12 77.8 48 83.3
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 3.9e-12 77.0 167 35.9
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.5e-11 75.1 36 97.2
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 5.6e-11 73.2 55 72.7
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 6.2e-10 69.7 47 72.3
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.0e-10 69.3 40 85.0
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 8.0e-10 69.3 44 68.2
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 4.0e-09 67.0 59 62.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.5e-08 65.1 32 90.6
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 7.5e-08 62.8 46 73.9
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.9e-07 60.8 31 90.3


User provided reference genes

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