Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 3.9e-226 787.7 380 100.0
Sed0005389 Sechium edule HOM05D002660 ORTHO05D013121 3.7e-115 419.1 208 95.7
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 4.0e-53 213.0 419 36.3
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.4e-42 176.0 254 40.6
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 2.1e-38 164.1 199 42.7
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 8.9e-37 158.7 472 25.4
Actinidia11788 Actinidia chinensis HOM05D002660 ORTHO05D013121 2.9e-35 153.7 127 54.3
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 2.5e-31 140.6 195 36.9
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 2.5e-31 140.6 195 36.9
Lsat_1_v5_gn_8_93880 Lactuca sativa HOM05D002660 ORTHO05D013121 2.8e-30 137.1 153 45.1
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 4.0e-29 133.3 161 40.4
Actinidia34821 Actinidia chinensis HOM05D002660 ORTHO05D013121 9.0e-29 132.1 162 37.7
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.2e-27 127.5 167 43.1
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.2e-26 123.6 461 24.3
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 3.5e-25 120.2 241 31.1
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-24 117.1 168 41.1
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 5.6e-23 112.8 470 25.1
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-21 107.8 164 41.5
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-21 107.8 164 41.5
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-21 107.8 164 41.5
Eucgr.J01097 Eucalyptus grandis HOM05D002660 ORTHO05D011807 3.1e-21 107.1 94 55.3
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-20 104.8 371 26.7
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-20 104.8 371 26.7
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-20 104.8 371 26.7
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-20 104.8 371 26.7
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 7.6e-20 102.4 127 50.4
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.2e-19 100.9 81 67.9
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-18 97.8 178 39.3
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 5.4e-18 96.3 91 48.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.3e-16 91.7 271 26.9
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 1.3e-16 91.7 68 63.2
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 1.8e-16 91.3 114 33.3
SGA_v2.0_scaffold400G50959 Striga asiatica HOM05D002660 ORTHO05D003902 6.7e-16 89.4 94 45.7
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-15 88.2 152 39.5
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 1.9e-15 87.8 132 35.6
Dinv06709 Davidia involucrata HOM05D002660 ORTHO05D013121 5.6e-15 86.3 144 30.6
Medtr2154s0010 Medicago truncatula HOM05D002660 ORTHO05D013121 9.6e-15 85.5 99 44.4
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.6e-14 84.7 69 59.4
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.8e-14 84.0 94 52.1
Sc05g0004270 Simmondsia chinensis HOM05D002660 ORTHO05D011807 3.7e-14 83.6 61 62.3
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 2.4e-13 80.9 254 28.0
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 2.4e-13 80.9 254 28.0
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 2.4e-13 80.9 222 30.2
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.1e-13 80.5 136 29.4
SalBow1G8110 Salvia bowleyana HOM05D002660 ORTHO05D003902 5.3e-13 79.7 153 31.4
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.3e-13 79.7 176 30.7
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.3e-13 79.7 176 30.7
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.3e-13 79.7 176 30.7
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 5.3e-13 79.7 176 30.7
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 2.6e-12 77.4 57 66.7
CAN.G1167.15 Capsicum annuum HOM05D002660 ORTHO05D013121 3.4e-12 77.0 124 30.6
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.4e-12 77.0 132 31.1
Gorai.001G162800 Gossypium raimondii HOM05D002660 ORTHO05D013121 3.4e-12 77.0 69 49.3
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 4.5e-12 76.6 119 34.5
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.8e-12 76.3 176 30.1
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.0e-11 75.5 87 41.4
Lsat_1_v5_gn_0_35081 Lactuca sativa HOM05D002660 ORTHO05D013121 1.3e-11 75.1 101 40.6
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.3e-11 75.1 57 61.4
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 1.7e-11 74.7 139 36.7
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.2e-11 74.3 271 27.7
Sed0024774 Sechium edule HOM05D002660 ORTHO05D003902 2.2e-11 74.3 141 30.5
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 4.9e-11 73.2 252 25.4
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.4e-10 71.6 102 41.2
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.4e-10 71.6 102 41.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.4e-10 71.6 102 41.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.4e-10 71.6 102 41.2
Aa31csc822G10 Aethionema arabicum HOM05D002660 ORTHO05D013121 1.9e-10 71.2 114 30.7
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-10 71.2 81 44.4
Nitab4.5_0009709g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 5.5e-10 69.7 115 35.7
Actinidia34846 Actinidia chinensis HOM05D002660 ORTHO05D013121 7.1e-10 69.3 79 31.6
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 7.1e-10 69.3 116 40.5
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 9.3e-10 68.9 226 27.4
Lalb_Chr00c24g0406801 Lupinus albus HOM05D002660 ORTHO05D011807 1.2e-09 68.6 76 46.1
Nitab4.5_0000172g0830 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.6e-09 68.2 120 36.7
Nitab4.5_0001796g0150 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.1e-09 67.8 115 34.8
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 2.1e-09 67.8 48 68.8
AT2G07691 Arabidopsis thaliana HOM05D037830 ORTHO05D013121 2.7e-09 67.4 109 29.4
ATMG01310 Arabidopsis thaliana HOM05D037830 ORTHO05D013121 2.7e-09 67.4 109 29.4
CARHR283500 Cardamine hirsuta HOM05D037830 ORTHO05D013121 2.7e-09 67.4 109 29.4
Ca_22165_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 2.7e-09 67.4 75 37.3
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 2.7e-09 67.4 87 48.3
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.5e-09 67.0 164 32.9
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 2.3e-08 64.3 109 33.0
Lalb_Chr00c24g0406861 Lupinus albus HOM05D002660 ORTHO05D013121 3.0e-08 63.9 111 35.1
Nitab4.5_0000172g1900 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.0e-08 63.9 105 36.2
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.9e-08 63.5 106 33.0
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 6.7e-08 62.8 64 51.6
Nitab4.5_0001788g0190 Nicotiana tabacum HOM05D002660 ORTHO05D011807 8.7e-08 62.4 115 34.8
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 8.7e-08 62.4 93 44.1
Nitab4.5_0027526g0010 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.9e-07 61.2 87 40.2
COL.COLO4_00533 Corchorus olitorius HOM05D015026 ORTHO05D015810 3.3e-07 60.5 77 32.5
Nitab4.5_0004300g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 5.7e-07 59.7 82 42.7
SHI20127 Sapria himalayana HOM05D003517 ORTHO05D028046 7.4e-07 59.3 65 46.2
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 7.4e-07 59.3 137 32.1
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 1.3e-06 58.5 63 47.6
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 2.1e-06 57.8 61 47.5
Nitab4.5_0000592g0110 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.1e-06 57.8 82 41.5
SHI34651 Sapria himalayana HOM05D002660 ORTHO05D003902 2.1e-06 57.8 65 46.2
SHI35938 Sapria himalayana HOM05D024615 ORTHO05D003902 3.7e-06 57.0 45 57.8
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 8.2e-06 55.8 44 59.1


User provided reference genes

Program Settings