Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 2.2e-51 205.3 99 100.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 6.3e-51 203.8 98 99.0
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 1.6e-49 199.1 99 97.0
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 6.5e-48 193.7 98 93.9
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.5e-47 192.6 99 91.9
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.9e-47 192.2 100 93.0
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 7.2e-47 190.3 101 93.1
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.2e-46 189.5 99 93.9
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-46 189.1 98 93.9
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-46 189.1 98 93.9
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-46 189.1 98 93.9
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-45 186.0 99 91.9
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 1.4e-45 186.0 99 91.9
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 1.2e-44 183.0 98 91.8
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.2e-44 183.0 92 93.5
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 8.3e-43 176.8 99 89.9
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 8.3e-43 176.8 99 89.9
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.8e-42 175.6 88 94.3
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 4.1e-42 174.5 101 86.1
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 1.5e-39 166.0 93 86.0
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 2.1e-38 162.2 94 83.0
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 3.4e-36 154.8 78 96.2
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 4.4e-36 154.5 93 80.6
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 9.8e-36 153.3 99 81.8
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.7e-35 152.5 78 92.3
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.5e-33 144.4 71 95.8
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.5e-33 144.4 71 95.8
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.5e-33 144.4 71 95.8
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 2.5e-31 138.7 68 95.6
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 2.8e-30 135.2 65 96.9
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 3.6e-30 134.8 65 96.9
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 1.8e-29 132.5 65 95.4
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 1.8e-29 132.5 65 95.4
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 3.0e-29 131.7 64 96.9
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 6.8e-29 130.6 64 95.3
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 6.8e-29 130.6 64 95.3
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 6.8e-29 130.6 64 95.3
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 6.8e-29 130.6 64 95.3
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 6.8e-29 130.6 64 95.3
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 6.8e-29 130.6 64 95.3
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 1.5e-28 129.4 61 98.4
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 2.2e-27 125.6 87 72.4
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.7e-27 124.8 87 71.3
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 3.7e-27 124.8 64 92.2
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 4.9e-27 124.4 68 86.8
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.1e-26 123.2 63 90.5
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.1e-26 123.2 63 90.5
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.1e-26 123.2 63 90.5
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.1e-26 123.2 63 90.5
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.1e-26 123.2 63 90.5
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.1e-26 123.2 63 90.5
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 1.1e-26 123.2 68 85.3
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.8e-26 122.5 65 92.3
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 3.2e-26 121.7 61 91.8
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 9.2e-26 120.2 68 82.4
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 2.0e-25 119.0 68 83.8
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 1.0e-24 116.7 66 90.9
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 1.7e-24 115.9 55 96.4
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 5.0e-24 114.4 54 98.1
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 5.0e-24 114.4 54 98.1
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 8.6e-24 113.6 58 91.4
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 1.1e-23 113.2 96 58.3
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.5e-23 112.1 66 87.9
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 9.5e-23 110.2 52 96.2
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 8.0e-22 107.1 65 81.5
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 8.0e-22 107.1 57 87.7
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 4.0e-21 104.8 50 96.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 4.0e-21 104.8 50 96.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 4.0e-21 104.8 50 96.0
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 5.8e-20 100.9 50 94.0
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 9.8e-20 100.1 68 72.1
Atru.chr9.266 Acer truncatum HOM05D001966 ORTHO05D007227 1.3e-19 99.8 51 94.1
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 1.1e-18 96.7 61 78.7
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 1.1e-18 96.7 52 86.5
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 1.9e-18 95.9 95 58.9
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 9.2e-18 93.6 65 73.8
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-17 92.8 69 69.6
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-17 92.4 63 71.4
Psat5g118880 Pisum sativum HOM05D001966 ORTHO05D007227 4.6e-17 91.3 53 88.7
arahy.Tifrunner.gnm1.ann1.ZUEQ40 Arachis hypogaea HOM05D000743 ORTHO05D007227 1.3e-16 89.7 56 78.6
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.7e-16 89.4 69 65.2
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 3.0e-16 88.6 66 74.2
EL10As15g24131 Beta vulgaris HOM05D001966 ORTHO05D007227 8.6e-16 87.0 52 78.8
HPP92_008300 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.5e-15 85.5 57 73.7
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 4.7e-14 81.3 39 94.9
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 8.1e-14 80.5 47 80.9
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 1.8e-13 79.3 76 61.8
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 6.8e-13 77.4 38 92.1
TPR.G6399 Trifolium pratense HOM05D001966 ORTHO05D007227 1.2e-12 76.6 64 64.1
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-12 75.9 58 67.2
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 5.8e-12 74.3 49 69.4
Oeu041170.1 Olea europaea HOM05D000708 ORTHO05D007227 7.5e-12 73.9 36 94.4
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 6.4e-11 70.9 50 70.0
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 8.3e-11 70.5 50 76.0
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-10 69.7 94 42.6
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.2e-09 66.6 48 66.7
MELO3C027875.2 Cucumis melo HOM05D001966 ORTHO05D007227 8.6e-08 60.5 33 81.8
Phvul.003G142600 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 7.3e-07 57.4 36 83.3
MELO3C000925.2 Cucumis melo HOM05D001966 ORTHO05D007227 1.2e-06 56.6 33 78.8
Nitab4.5_0000464g0150 Nicotiana tabacum HOM05D007560 ORTHO05D005947 8.1e-06 53.9 35 71.4


User provided reference genes

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