Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 1.6e-96 356.3 205 100.0
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 8.5e-34 147.9 71 95.8
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.1e-33 147.5 74 93.2
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.5e-33 147.1 71 95.8
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 5.5e-33 145.2 74 91.9
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 9.4e-33 144.4 71 94.4
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 9.4e-33 144.4 71 94.4
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.2e-32 144.1 71 93.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 3.6e-32 142.5 71 93.0
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 8.0e-32 141.4 71 93.0
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 4.0e-31 139.0 74 87.8
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 2.0e-30 136.7 71 90.1
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 2.0e-30 136.7 71 90.1
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 2.6e-30 136.3 102 68.6
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 3.3e-30 136.0 102 68.6
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 3.3e-30 136.0 102 68.6
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 9.7e-30 134.4 98 69.4
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 9.7e-30 134.4 65 95.4
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 6.3e-29 131.7 74 79.7
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 5.3e-28 128.6 72 84.7
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 7.0e-28 128.3 74 83.8
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 1.6e-27 127.1 98 66.3
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 2.0e-27 126.7 74 82.4
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 1.3e-26 124.0 72 81.9
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 8.5e-26 121.3 71 84.5
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.5e-25 118.6 97 64.9
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 7.2e-25 118.2 67 83.6
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.1e-24 115.2 74 77.0
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 1.0e-23 114.4 70 77.1
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.3e-23 113.2 101 61.4
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 6.8e-23 111.7 105 63.8
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 6.8e-23 111.7 105 63.8
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 6.8e-23 111.7 105 63.8
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 6.8e-23 111.7 105 63.8
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 6.8e-23 111.7 105 63.8
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 1.5e-22 110.5 78 73.1
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 2.6e-22 109.8 105 62.9
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.7e-21 107.1 105 61.9
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.1e-20 102.8 62 79.0
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.9e-19 98.6 71 73.2
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 1.1e-17 94.4 58 79.3
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.3e-15 86.7 58 75.9
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.3e-13 78.6 71 59.2
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 2.0e-11 73.6 65 56.9
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 5.6e-09 65.5 31 96.8
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 3.0e-07 59.7 62 54.8
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 4.0e-07 59.3 52 59.6
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 4.0e-07 59.3 60 50.0
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 4.0e-07 59.3 60 50.0
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.5e-06 57.4 75 46.7
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 3.4e-06 56.2 30 83.3


User provided reference genes

Program Settings