Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022987 Carpinus fangiana HOM05D002965 ORTHO05D010183 0.0e+00 1412.9 743 100.0
RhsimMtG0001000 Rhododendron simsii HOM05D000743 ORTHO05D000580 2.5e-67 261.2 382 46.9
VMungo0647G1384 Vigna mungo HOM05D002965 ORTHO05D010183 2.7e-61 241.1 132 90.2
Nitab4.5_0005831g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.1e-57 229.2 449 44.5
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 8.9e-57 226.1 321 48.0
Sed0028066 Sechium edule HOM05D002965 ORTHO05D010183 3.2e-54 217.6 502 37.8
Nitab4.5_0001761g0080 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.3e-52 211.5 477 40.0
SHI41349 Sapria himalayana HOM05D037518 ORTHO05D010183 4.0e-49 200.7 139 77.7
Cpa.g.sc263.24 Carica papaya HOM05D002965 ORTHO05D011068 4.9e-47 193.7 223 60.5
Nitab4.5_0000172g1470 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.2e-45 189.1 440 39.3
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 3.5e-45 187.6 383 39.7
Dinv06704 Davidia involucrata HOM05D002965 ORTHO05D010183 1.3e-44 185.7 304 44.4
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 3.0e-44 184.5 438 36.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 7.3e-43 179.9 136 72.1
CSS0042238 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D043359 2.8e-42 177.9 125 76.8
Peaxi162Scf02014g00001 Petunia axillaris HOM05D016050 ORTHO05D011068 5.8e-40 170.2 172 61.0
SGA_v2.0_scaffold479G52282 Striga asiatica HOM05D002965 ORTHO05D010183 2.4e-38 164.9 301 43.9
SHI48910 Sapria himalayana HOM05D002965 ORTHO05D010183 1.7e-36 158.7 92 89.1
CAN.G285.11 Capsicum annuum HOM05D002965 ORTHO05D010183 2.4e-33 148.3 77 97.4
PGSC0003DMG400017419 Solanum tuberosum HOM05D002965 ORTHO05D011068 8.4e-31 139.8 99 81.8
unitig_87.g27935 Utricularia gibba HOM05D002965 ORTHO05D010183 9.3e-30 136.3 285 38.9
CDE02G3239 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 6.0e-29 133.7 166 51.2
Solyc00g118690.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 3.3e-27 127.9 96 76.0
Nitab4.5_0002558g0110 Nicotiana tabacum HOM05D002965 ORTHO05D011068 2.8e-26 124.8 210 46.7
Peaxi162Scf00197g00037 Petunia axillaris HOM05D002965 ORTHO05D010183 1.4e-25 122.5 120 61.7
ATMG01130 Arabidopsis thaliana HOM05D002965 ORTHO05D011068 1.5e-24 119.0 107 71.0
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 1.3e-23 115.9 153 49.0
Nitab4.5_0002653g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 4.2e-22 110.9 191 46.6
BraSC48t46251Z Brassica rapa HOM05D002965 ORTHO05D010183 2.1e-21 108.6 55 98.2
Cpa.g.sc263.23 Carica papaya HOM05D002965 ORTHO05D010183 4.6e-21 107.5 53 100.0
BNapus_Darmor_BZH_scaffold_234p00010 Brassica napus HOM05D016050 ORTHO05D011068 6.0e-21 107.1 122 54.9
BolSC28t60381H Brassica oleracea HOM05D016050 ORTHO05D011068 6.0e-21 107.1 122 54.9
BraSC224t45813Z Brassica rapa HOM05D016050 ORTHO05D011068 6.0e-21 107.1 122 54.9
BraSC77t46623Z Brassica rapa HOM05D016050 ORTHO05D011068 6.0e-21 107.1 122 54.9
Nitab4.5_0001796g0200 Nicotiana tabacum HOM05D002965 ORTHO05D011068 7.9e-21 106.7 138 54.3
QL05p039661 Quercus lobata HOM05D002965 ORTHO05D010183 1.3e-20 105.9 53 98.1
BNapus_Darmor_BZH_scaffold_234p00020 Brassica napus HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
BolSC28t60382H Brassica oleracea HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
BolSC28t60415H Brassica oleracea HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
BraSC177t45752Z Brassica rapa HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
CsaV3_UNG209220 Cucumis sativus L. HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
ECA039G0012 Erigeron canadensis HOM05D002965 ORTHO05D010183 2.3e-20 105.1 55 96.4
LjContig00315g0010995 Lotus japonicus HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
Medtr0082s0280 Medicago truncatula HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
Potri.007G061981 Populus trichocarpa HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
RcHm_v2.0_MTg0499241 Rosa chinensis HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
Sp3g25630 Schrenkiella parvula HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
TPR.G40481 Trifolium pratense HOM05D002965 ORTHO05D010183 2.3e-20 105.1 53 98.1
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 8.7e-20 103.2 54 96.3
arahy.Tifrunner.gnm1.ann1.CG3D8R Arachis hypogaea HOM05D002965 ORTHO05D010183 8.7e-20 103.2 52 98.1
arahy.Tifrunner.gnm1.ann1.EP7E6M Arachis hypogaea HOM05D002965 ORTHO05D010183 8.7e-20 103.2 52 98.1
arahy.Tifrunner.gnm1.ann1.I1QAK6 Arachis hypogaea HOM05D002965 ORTHO05D010183 8.7e-20 103.2 52 98.1
Actinidia10888 Actinidia chinensis HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
CAN.G1061.19 Capsicum annuum HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
CAN.G309.4 Capsicum annuum HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
HanXRQChr08g0212281 Helianthus annuus HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
HanXRQMTg0579441 Helianthus annuus HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
Hma1.2p1_0713F.1_g207720 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
Hma1.2p1_1338F.1_g276549 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
Hma1.2p1_1338F.1_g276560 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
Lsat_1_v5_gn_4_66041 Lactuca sativa HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
Medtr5g040110 Medicago truncatula HOM05D002965 ORTHO05D010183 1.9e-19 102.1 53 96.2
Nitab4.5_0002558g0140 Nicotiana tabacum HOM05D002965 ORTHO05D010183 7.4e-19 100.1 53 94.3
Eucgr.C02171 Eucalyptus grandis HOM05D002965 ORTHO05D011068 9.6e-19 99.8 80 73.8
Aqoxy1G02687 Aquilegia oxysepala HOM05D002965 ORTHO05D010183 1.6e-18 99.0 53 94.3
CsaV3_UNG209190 Cucumis sativus L. HOM05D016050 ORTHO05D011068 1.6e-18 99.0 129 50.4
Hma1.2p1_0204F.1_g086870 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 2.1e-18 98.6 111 54.1
MELO3C031425.2 Cucumis melo HOM05D002965 ORTHO05D010183 6.2e-18 97.1 77 67.5
SalBow1G8555 Salvia bowleyana HOM05D002965 ORTHO05D010183 6.2e-18 97.1 53 92.5
Nitab4.5_0001763g0110 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.1e-17 96.3 188 38.8
CDE02G2102 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 1.8e-17 95.5 157 45.2
Nitab4.5_0005613g0040 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.4e-17 95.1 53 90.6
Haze_01424 Corylus avellana HOM05D022652 ORTHO05D011068 4.0e-17 94.4 62 85.5
Haze_01425 Corylus avellana HOM05D022652 ORTHO05D011068 4.0e-17 94.4 62 85.5
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 1.2e-16 92.8 53 86.8
CAN.G1576.4 Capsicum annuum HOM05D002965 ORTHO05D010183 1.5e-16 92.4 53 88.7
CSS0045201 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D011068 1.0e-15 89.7 76 72.4
Peaxi162Scf00863g00003 Petunia axillaris HOM05D002965 ORTHO05D011068 1.1e-14 86.3 44 95.5
Nitab4.5_0000580g0190 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.4e-14 85.9 44 93.2
Thhalv10022991m.g Eutrema salsugineum HOM05D016050 ORTHO05D011068 7.1e-14 83.6 68 73.5
ECA246G1890 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.2e-13 82.8 46 87.0
Nitab4.5_0002418g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.0e-12 79.7 43 90.7
Sopen06g007640 Solanum pennellii HOM05D002965 ORTHO05D012151 1.3e-12 79.3 129 42.6
Nitab4.5_0000859g0140 Nicotiana tabacum HOM05D002965 ORTHO05D011068 2.3e-12 78.6 48 85.4
TPR.G39428 Trifolium pratense HOM05D016050 ORTHO05D011068 2.3e-12 78.6 68 60.3
MELO3C023755.2 Cucumis melo HOM05D066561 ORTHO05D011068 1.5e-11 75.9 108 52.8
CsaV3_UNG209210 Cucumis sativus L. HOM05D002965 ORTHO05D043359 1.3e-10 72.8 44 77.3
Nitab4.5_0000886g0150 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.6e-10 72.4 191 32.5
Nitab4.5_0005613g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.6e-10 72.4 166 38.0
Psat6g191080 Pisum sativum HOM05D002965 ORTHO05D010183 2.2e-10 72.0 163 34.4
Nitab4.5_0000215g0070 Nicotiana tabacum HOM05D002965 ORTHO05D011068 4.8e-10 70.9 121 45.5
Solyc04g051275.1 Solanum lycopersicum HOM05D002965 ORTHO05D011068 8.2e-10 70.1 60 66.7
CAN.G390.19 Capsicum annuum HOM05D002965 ORTHO05D010183 1.1e-09 69.7 43 81.4
SHI27034 Sapria himalayana HOM05D023343 ORTHO05D011068 1.4e-09 69.3 132 40.2
Ah.04g159760 Amaranthus hybridus HOM05D003103 ORTHO05D011068 6.9e-09 67.0 40 80.0
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 9.0e-09 66.6 71 54.9
Nitab4.5_0004376g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.0e-08 65.5 37 91.9
Nitab4.5_0000859g0160 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.6e-08 65.1 63 55.6
CSS0026545 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D010183 1.0e-07 63.2 31 96.8
Lalb_Chr00c21g0405781 Lupinus albus HOM05D002965 ORTHO05D010183 1.0e-07 63.2 31 96.8
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 2.2e-07 62.0 37 83.8
Nitab4.5_0001796g0410 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.9e-07 61.6 31 93.5
Dinv34203 Davidia involucrata HOM05D002965 ORTHO05D010183 6.5e-07 60.5 39 71.8


User provided reference genes

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