Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.6e-294 1014.2 531 100.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.8e-243 844.7 538 82.7
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 5.7e-215 751.1 518 78.6
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 2.7e-209 732.3 537 73.9
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 2.7e-209 732.3 677 64.5
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.3e-178 629.0 524 62.2
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 3.6e-177 625.5 532 62.2
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 1.0e-171 607.4 531 60.3
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.1e-170 604.0 527 61.9
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.5e-170 603.6 530 62.3
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 2.5e-170 602.8 531 60.6
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 4.3e-170 602.1 527 61.9
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 3.6e-169 599.0 554 59.9
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 4.7e-169 598.6 549 59.0
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 3.2e-165 585.9 534 60.1
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 4.1e-165 585.5 531 60.6
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.0e-164 581.6 530 60.8
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.0e-163 580.9 530 60.4
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.0e-163 579.3 530 60.2
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 9.5e-162 574.3 525 58.7
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 5.8e-159 565.1 510 57.1
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 4.9e-158 562.0 528 57.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 2.4e-157 559.7 530 59.1
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.2e-156 557.4 523 58.5
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.5e-156 555.8 524 58.0
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 6.6e-155 551.6 520 58.7
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.8e-152 543.5 539 56.8
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.6e-151 539.7 561 53.1
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 5.8e-151 538.5 523 56.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 9.9e-151 537.7 526 55.7
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.7e-150 537.0 526 56.7
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 2.2e-150 536.6 525 56.6
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 6.4e-150 535.0 526 56.5
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-149 533.9 530 53.4
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 3.5e-148 529.3 529 55.4
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 6.6e-147 525.0 527 53.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.6e-146 521.9 601 48.6
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.1e-144 517.7 529 51.6
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.1e-144 517.7 546 51.1
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.5e-143 513.8 528 54.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.6e-143 513.1 533 52.3
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.4e-143 512.7 532 53.8
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 5.8e-143 511.9 530 53.4
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.9e-142 509.6 531 52.7
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.2e-141 505.8 527 50.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 2.1e-140 503.4 531 53.1
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 3.5e-140 502.7 531 53.1
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 5.6e-138 495.4 534 51.5
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 9.6e-138 494.6 528 53.6
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.6e-137 493.8 525 52.4
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.6e-137 493.8 546 49.8
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 6.2e-137 491.9 540 50.2
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 2.4e-136 490.0 505 54.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 4.0e-136 489.2 553 51.7
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 6.9e-136 488.4 446 60.5
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.3e-134 484.2 547 49.5
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.7e-134 483.8 544 49.8
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.2e-134 483.4 544 49.8
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.2e-134 483.4 531 50.5
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-133 481.1 544 49.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-133 481.1 546 49.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.4e-133 480.7 540 50.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 2.7e-132 476.5 522 52.3
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 3.5e-132 476.1 537 50.3
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.1e-131 472.2 561 47.8
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 8.7e-131 471.5 536 49.3
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.9e-130 470.3 538 50.2
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.1e-129 466.8 532 49.6
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 6.2e-129 465.3 535 48.6
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 1.1e-128 464.5 536 49.4
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 9.0e-128 461.5 527 50.3
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 1.2e-127 461.1 532 49.1
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 5.8e-127 458.8 535 49.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 7.6e-127 458.4 535 49.7
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.3e-126 457.6 532 48.3
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.6e-124 449.1 526 45.6
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.0e-123 448.0 535 47.5
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.8e-123 447.2 528 47.0
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.9e-123 446.0 532 47.2
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 8.7e-123 444.9 529 48.2
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.3e-122 442.6 532 46.8
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 7.4e-122 441.8 528 46.6
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 7.4e-122 441.8 528 46.6
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.6e-121 440.7 528 46.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.1e-121 440.3 530 47.0
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.8e-121 439.9 539 47.5
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 2.0e-119 433.7 530 46.8
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.0e-118 431.4 531 45.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.3e-118 431.0 531 46.9
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.7e-118 430.6 529 45.6
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 2.9e-118 429.9 524 45.6
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.4e-117 427.6 528 45.3
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.4e-117 427.6 528 45.1
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 5.5e-117 425.6 433 54.5
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 2.1e-116 423.7 549 46.4
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 6.1e-116 422.2 483 51.3
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.3e-115 420.2 554 44.2
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.2e-111 407.9 527 44.6
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.6e-111 406.8 533 45.4
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.0e-110 404.8 506 46.2
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.4e-109 401.0 414 53.6
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 6.7e-107 392.1 532 44.0
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.6e-106 390.2 546 43.2
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.7e-105 387.5 530 43.2
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.8e-105 386.7 528 42.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 7.7e-103 378.6 538 42.4
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.7e-103 378.6 527 42.5
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 2.2e-102 377.1 383 51.7
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.6e-100 370.9 381 51.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 3.6e-100 369.8 280 71.4
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.4e-91 341.3 560 38.6
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 6.7e-91 339.0 557 39.1
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 6.7e-91 339.0 562 38.8
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 8.8e-91 338.6 403 47.6
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.7e-90 335.9 466 44.2
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 3.7e-89 333.2 329 52.6
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.6e-87 327.8 530 40.9
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 9.4e-85 318.5 529 40.3
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 4.0e-83 313.2 340 50.0
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 6.8e-83 312.4 539 38.6
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.2e-77 293.5 275 58.5
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.8e-76 290.4 346 48.3
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 5.0e-70 269.6 253 58.9
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.2e-66 258.5 492 37.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 5.7e-66 256.1 219 58.0
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.6e-60 238.0 443 37.7
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 6.2e-60 236.1 259 48.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.1e-59 233.8 450 34.2
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.2e-50 205.3 371 37.7
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.9e-41 173.3 159 56.6
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.9e-41 173.3 364 36.5
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 4.0e-35 153.7 139 58.3
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.4e-33 146.4 170 46.5
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 1.2e-31 142.1 655 24.6
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 3.5e-31 140.6 153 44.4
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.3e-30 138.7 153 44.4
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 8.7e-30 136.0 149 51.7
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 5.6e-29 133.3 214 37.4
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.6e-28 131.7 148 43.2
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 2.4e-27 127.9 250 35.2
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.6e-26 124.4 185 39.5
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 3.4e-26 124.0 182 45.1
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.1e-24 119.0 533 24.2
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.4e-19 102.1 185 34.1
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.0e-19 100.5 277 30.0
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.7e-17 95.1 141 39.7
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 3.1e-11 74.3 180 32.2
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 2.5e-08 64.7 88 39.8
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 2.7e-07 61.2 97 35.1


User provided reference genes

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