Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.6e-218 760.4 371 100.0
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 8.1e-176 620.5 377 82.5
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 7.9e-171 604.0 402 75.9
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.5e-166 589.7 377 77.5
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.4e-166 588.6 378 77.8
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.2e-165 585.9 377 79.3
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.8e-165 585.1 377 77.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.4e-164 582.4 375 76.3
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 3.5e-163 578.6 377 76.1
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 7.9e-163 577.4 378 76.2
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.1e-162 574.7 376 75.3
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 5.1e-162 574.7 377 75.9
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 8.7e-162 573.9 376 78.5
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.5e-161 573.2 378 75.1
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.9e-161 572.8 377 76.9
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 5.6e-161 571.2 377 75.1
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 7.4e-161 570.9 377 75.6
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.3e-160 570.1 377 75.6
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.6e-160 569.7 379 74.9
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.6e-160 569.7 376 74.2
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.1e-160 569.3 376 74.2
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.8e-160 568.9 381 75.3
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.0e-159 565.1 377 74.8
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.0e-158 562.8 364 75.8
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.0e-158 562.8 380 73.9
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 2.6e-158 562.4 377 74.8
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 7.6e-158 560.8 381 73.8
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.3e-157 560.1 376 73.4
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.8e-157 558.5 391 72.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 4.9e-157 558.1 401 70.3
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.4e-156 556.6 376 72.9
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 3.2e-156 555.4 376 73.1
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 3.2e-156 555.4 397 71.8
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.5e-156 554.7 378 73.8
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 7.1e-156 554.3 378 73.5
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 9.3e-156 553.9 376 73.1
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 6.0e-155 551.2 372 71.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.3e-154 549.3 322 87.3
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 3.9e-154 548.5 372 74.2
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 8.7e-154 547.4 343 77.6
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.1e-153 547.0 378 73.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 3.3e-153 545.4 376 72.6
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 3.3e-153 545.4 376 71.8
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.3e-152 543.5 376 71.0
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 2.4e-151 539.3 377 72.9
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-150 537.0 376 71.0
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.3e-149 533.5 379 72.0
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.8e-149 531.9 376 69.1
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 5.0e-149 531.6 378 69.6
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 2.5e-148 529.3 318 80.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.2e-148 528.9 378 70.4
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.2e-147 526.9 376 71.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 6.1e-147 524.6 376 68.4
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.0e-146 523.9 379 70.7
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.3e-146 522.7 378 68.0
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 2.3e-146 522.7 377 69.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 3.0e-146 522.3 318 78.3
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.9e-146 521.9 378 68.3
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.7e-146 521.2 382 70.4
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 6.7e-146 521.2 378 70.4
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 6.7e-146 521.2 379 67.8
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 8.7e-146 520.8 381 68.0
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.5e-145 519.2 378 68.5
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.5e-145 519.2 376 68.4
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 3.3e-145 518.8 379 69.1
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.3e-145 518.5 377 68.2
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 7.4e-145 517.7 377 68.7
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.6e-144 516.5 362 71.8
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.8e-144 515.8 361 70.6
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.8e-144 515.8 326 77.6
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.1e-143 513.8 307 81.1
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.4e-143 513.5 346 71.4
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.4e-143 513.5 333 73.6
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.4e-143 512.7 321 76.9
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.5e-142 508.4 380 66.6
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.3e-141 506.9 379 66.8
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.5e-141 504.6 343 69.7
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-140 502.7 377 65.8
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.2e-139 500.4 345 69.9
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-139 500.4 378 66.1
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.2e-139 500.4 378 66.1
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.1e-139 499.6 355 67.9
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 4.6e-139 498.4 378 66.1
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.6e-139 498.4 380 64.7
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 3.9e-138 495.4 378 65.9
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 3.9e-138 495.4 378 65.9
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 5.1e-138 495.0 377 63.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 6.7e-138 494.6 344 68.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 8.8e-138 494.2 379 66.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.1e-137 493.8 346 67.3
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.5e-137 492.7 407 62.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-137 492.7 378 64.8
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 3.3e-137 492.3 325 72.6
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.3e-137 491.9 377 65.8
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 9.7e-137 490.7 378 64.8
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 9.7e-137 490.7 316 73.1
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.2e-136 489.6 378 64.6
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 8.2e-136 487.6 346 66.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-135 487.3 378 64.3
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.4e-135 486.9 324 73.5
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-135 486.5 344 67.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 5.3e-135 485.0 318 72.3
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 9.1e-135 484.2 377 66.0
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 9.1e-135 484.2 318 72.6
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-134 483.8 318 73.0
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.6e-134 482.6 315 72.1
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.3e-133 480.3 377 63.7
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-132 476.9 377 62.9
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.5e-132 476.1 356 65.2
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 3.2e-132 475.7 325 72.6
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 4.2e-132 475.3 377 64.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 5.5e-132 474.9 326 74.2
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 7.2e-132 474.6 378 62.4
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.2e-131 473.8 333 69.1
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.8e-130 469.9 315 70.8
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.1e-130 468.4 306 72.5
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.3e-128 463.8 326 68.1
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 8.2e-128 461.1 361 62.3
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.4e-127 460.3 317 67.8
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.1e-127 459.1 325 72.3
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.5e-126 455.7 326 72.7
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.7e-125 453.4 304 69.7
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.5e-124 450.3 315 68.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 2.5e-124 449.5 316 66.5
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-123 446.8 351 63.2
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 4.0e-122 442.2 377 60.2
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 2.0e-121 439.9 287 74.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 4.8e-120 435.3 334 64.7
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 9.1e-119 431.0 258 76.7
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-118 430.3 245 79.6
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 2.7e-115 419.5 288 72.9
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 5.2e-114 415.2 218 90.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.5e-110 402.5 249 77.9
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.2e-109 399.8 293 63.1
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 4.0e-106 389.0 234 81.2
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.0e-103 378.3 233 73.4
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.0e-103 378.3 293 57.3
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.3e-101 374.0 318 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.0e-98 364.4 302 59.6
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 8.3e-96 354.8 329 52.0
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.9e-93 345.9 216 77.3
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 8.6e-93 344.7 334 51.5
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.3e-90 336.7 233 68.2
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 4.0e-90 335.9 298 57.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.7e-88 330.5 384 49.2
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.0e-81 307.0 220 71.8
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.4e-79 300.8 196 75.5
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.4e-79 300.8 196 75.0
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-68 263.8 216 62.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 8.7e-61 238.4 337 41.2
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 7.3e-60 235.3 181 69.6
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 2.1e-59 233.8 358 38.8
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 5.8e-57 225.7 299 43.8
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.2e-55 219.9 306 40.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 4.6e-54 216.1 323 39.0
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.9e-53 213.0 114 84.2
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.7e-53 212.2 153 71.2
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-37 160.6 101 79.2
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 3.0e-37 160.2 138 63.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 5.1e-37 159.5 94 83.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-36 156.8 131 64.1
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 5.7e-36 156.0 94 80.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.1e-35 154.1 94 79.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 2.8e-35 153.7 131 62.6
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 9.0e-34 148.7 99 74.7
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.9e-32 143.7 97 77.3
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.5e-32 142.5 342 31.9
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.8e-27 126.3 66 86.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.2e-24 117.5 140 50.0
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-23 114.8 94 66.0
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 7.2e-23 112.5 116 52.6
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 7.9e-22 109.0 336 27.7
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.0e-16 92.0 58 72.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 3.8e-16 90.1 244 29.9
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.2e-15 86.7 75 58.7
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.2e-14 85.1 51 74.5
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 2.6e-12 77.4 45 80.0
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-11 75.1 41 82.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.2e-11 74.3 74 51.4
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 1.0e-08 65.5 39 71.8
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 1.5e-07 61.6 33 87.9
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.6e-06 57.0 32 75.0
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 4.7e-06 56.6 58 41.4


User provided reference genes

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