Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 3.3e-141 505.0 250 100.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 2.1e-111 406.0 247 80.2
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 9.8e-109 397.1 202 95.0
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 2.2e-100 369.4 213 83.6
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 2.1e-90 336.3 248 69.4
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 8.6e-89 330.9 240 68.8
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.6e-87 326.6 248 68.5
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 2.4e-86 322.8 229 67.2
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.2e-85 320.5 252 63.9
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 3.4e-85 318.9 253 62.5
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 6.4e-84 314.7 250 63.6
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 8.4e-84 314.3 247 62.8
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 7.1e-83 311.2 253 61.3
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 1.6e-82 310.1 247 64.4
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 2.1e-82 309.7 248 62.9
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 2.3e-81 306.2 251 61.4
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 2.3e-81 306.2 250 61.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 2.3e-81 306.2 251 64.9
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 8.7e-81 304.3 171 87.1
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.9e-80 303.1 248 61.7
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 4.3e-80 302.0 229 65.1
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.1e-78 295.8 257 59.5
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 3.1e-78 295.8 237 62.0
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 4.0e-78 295.4 248 61.3
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 4.0e-78 295.4 247 59.9
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 9.0e-78 294.3 254 60.2
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 1.5e-77 293.5 227 65.2
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 7.6e-77 291.2 248 58.5
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 9.9e-77 290.8 249 60.6
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 9.9e-77 290.8 197 70.1
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.7e-76 290.0 251 58.6
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.1e-75 287.3 222 65.3
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.1e-75 287.3 226 64.2
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 2.4e-75 286.2 207 64.3
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 3.2e-75 285.8 231 62.8
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 9.3e-75 284.3 248 59.7
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 2.1e-74 283.1 236 61.0
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 3.5e-74 282.3 209 64.6
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 3.5e-74 282.3 222 63.1
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 4.6e-74 282.0 226 62.4
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 7.9e-74 281.2 208 65.4
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.3e-73 280.4 225 61.3
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.3e-73 280.4 211 64.0
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.3e-73 280.4 222 63.1
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.0e-73 279.3 171 78.9
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 5.1e-73 278.5 209 65.6
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 6.7e-73 278.1 245 57.1
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 8.7e-73 277.7 219 63.5
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.1e-72 277.3 271 56.5
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 1.5e-72 276.9 228 61.8
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.5e-72 276.9 222 61.3
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 2.5e-72 276.2 219 63.0
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 2.5e-72 276.2 214 65.4
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 2.5e-72 276.2 251 59.8
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 4.3e-72 275.4 249 55.8
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 9.6e-72 274.2 225 61.8
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.1e-71 273.1 222 61.7
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 4.8e-71 271.9 225 59.1
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.1e-70 270.8 215 60.5
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.4e-70 270.4 241 56.4
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.2e-69 267.3 205 63.4
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.5e-69 266.9 249 56.6
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.5e-69 266.9 218 59.6
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.6e-69 266.2 255 51.4
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 2.6e-69 266.2 240 57.1
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 7.6e-69 264.6 211 62.1
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.3e-68 263.8 208 63.9
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 6.4e-68 261.5 200 63.5
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.9e-67 260.0 201 67.7
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 2.4e-67 259.6 199 64.3
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 5.5e-67 258.5 235 55.3
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 2.1e-66 256.5 218 58.3
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 3.5e-66 255.8 235 54.5
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 7.9e-66 254.6 225 56.0
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.3e-65 253.8 237 54.9
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.8e-65 253.4 217 57.1
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 1.8e-65 253.4 217 59.0
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 3.0e-65 252.7 204 59.3
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 3.0e-65 252.7 236 55.1
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 3.0e-65 252.7 252 56.3
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 6.7e-65 251.5 237 54.4
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 8.7e-65 251.1 206 60.7
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.5e-64 249.6 236 56.4
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 2.5e-64 249.6 251 51.8
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 3.3e-64 249.2 206 58.7
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 1.6e-63 246.9 217 56.7
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.6e-63 246.9 236 56.4
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 1.6e-63 246.9 164 70.1
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 2.1e-63 246.5 171 76.0
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 2.8e-63 246.1 213 57.3
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 4.8e-63 245.4 204 58.3
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 6.2e-63 245.0 222 58.6
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.4e-62 243.8 211 55.9
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 4.5e-61 238.8 246 52.0
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 1.7e-60 236.9 234 55.6
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.1e-59 234.2 258 51.9
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 2.1e-58 229.9 218 53.2
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.0e-57 227.6 200 53.5
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 1.0e-57 227.6 158 69.0
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 6.7e-57 224.9 129 85.3
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 9.3e-51 204.5 219 52.5
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 9.3e-51 204.5 234 48.7
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.8e-47 193.0 214 50.9
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.4e-46 190.7 129 69.8
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 9.1e-46 188.0 203 48.3
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 5.9e-45 185.3 240 45.0
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.9e-43 180.3 138 58.0
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 7.2e-43 178.3 170 57.6
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 4.6e-42 175.6 236 43.2
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 7.9e-42 174.9 252 45.6
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 1.3e-39 167.5 232 38.4
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 4.1e-38 162.5 136 58.1
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 2.6e-37 159.8 202 44.6
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 3.4e-37 159.5 108 75.0
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 9.4e-35 151.4 118 66.9
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 6.1e-34 148.7 312 31.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 9.1e-30 134.8 322 29.8
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 3.2e-27 126.3 125 53.6
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 6.1e-26 122.1 86 65.1
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 3.5e-21 106.3 228 33.8
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 3.8e-20 102.8 241 32.0
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 9.4e-19 98.2 116 45.7
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 1.5e-08 64.3 55 61.8


User provided reference genes

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