Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 1.1e-99 366.7 187 100.0
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 2.3e-94 349.0 187 95.2
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 2.0e-53 213.0 187 66.8
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 5.4e-51 204.9 198 61.1
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 2.5e-40 169.5 188 53.7
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 9.5e-40 167.5 193 52.8
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 2.8e-39 166.0 193 52.3
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 3.6e-39 165.6 193 52.3
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 2.0e-37 159.8 200 50.0
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 7.5e-37 157.9 217 49.3
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 9.8e-37 157.5 214 48.6
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.3e-36 157.1 199 48.7
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 3.2e-35 152.5 187 50.3
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.1e-35 152.1 195 50.8
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 1.6e-34 150.2 193 48.2
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 2.0e-34 149.8 213 48.8
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 4.6e-34 148.7 197 48.2
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 2.3e-33 146.4 206 48.1
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.0e-33 146.0 204 47.5
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.5e-32 143.7 194 47.9
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 2.1e-31 139.8 209 44.5
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 2.1e-31 139.8 191 48.7
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 2.8e-31 139.4 197 49.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.8e-30 136.7 187 47.6
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.8e-30 136.7 114 65.8
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 1.8e-30 136.7 183 49.7
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 2.3e-30 136.3 200 47.0
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 2.0e-29 133.3 193 48.2
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.8e-29 131.0 192 44.8
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 2.9e-28 129.4 194 44.8
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 6.4e-28 128.3 190 48.9
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 2.4e-27 126.3 203 40.9
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 2.4e-27 126.3 201 46.3
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 3.2e-27 125.9 200 41.5
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 4.1e-27 125.6 188 47.3
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 5.4e-27 125.2 213 44.1
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 5.4e-27 125.2 241 40.2
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 4.6e-26 122.1 194 47.4
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.7e-25 120.2 194 41.2
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 3.9e-25 119.0 223 42.6
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 6.6e-25 118.2 197 44.2
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 4.3e-24 115.5 184 42.9
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 4.3e-24 115.5 189 44.4
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 7.3e-24 114.8 199 41.2
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.8e-23 112.8 194 40.2
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 4.7e-23 112.1 199 40.7
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 4.7e-23 112.1 195 41.5
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 8.1e-23 111.3 199 42.7
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.1e-22 110.9 240 37.9
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 2.3e-22 109.8 230 41.7
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 3.1e-22 109.4 215 38.6
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 4.0e-22 109.0 190 39.5
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 1.2e-21 107.5 191 39.3
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 3.7e-20 102.4 216 38.9
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 3.7e-20 102.4 234 33.8
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 1.9e-19 100.1 236 34.3
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 1.9e-19 100.1 193 38.3
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 5.4e-19 98.6 190 37.4
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 9.2e-19 97.8 193 36.8
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.2e-18 97.4 192 36.5
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 1.6e-18 97.1 196 37.2
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 2.7e-18 96.3 201 34.8
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 3.5e-18 95.9 198 35.9
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.0e-17 94.4 201 36.3
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 1.0e-17 94.4 206 35.4
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 2.3e-17 93.2 198 35.4
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 3.9e-17 92.4 198 35.4
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 5.1e-17 92.0 192 35.4
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 5.1e-17 92.0 154 44.2
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 6.6e-17 91.7 198 34.8
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 6.6e-17 91.7 198 34.8
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.1e-16 90.9 206 34.5
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 3.3e-16 89.4 218 35.3
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 4.3e-16 89.0 196 33.2
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 4.3e-16 89.0 194 35.6
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 9.5e-16 87.8 189 38.6
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 2.1e-15 86.7 193 38.3
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 2.1e-15 86.7 194 36.1
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 3.6e-15 85.9 198 32.3
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 6.2e-15 85.1 157 38.9
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 1.1e-14 84.3 216 32.9
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 1.4e-14 84.0 184 32.6
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 1.8e-14 83.6 212 34.9
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 3.1e-14 82.8 184 35.3
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 4.0e-14 82.4 187 36.9
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 8.9e-14 81.3 202 33.2
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 8.9e-14 81.3 77 55.8
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.5e-13 80.5 71 57.7
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 2.0e-13 80.1 198 32.3
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 5.8e-13 78.6 202 32.2
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 1.7e-12 77.0 181 32.6
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.1e-11 74.3 234 32.5
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 1.9e-11 73.6 197 30.5
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 3.2e-11 72.8 232 32.8
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 5.4e-11 72.0 71 57.7
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 5.4e-11 72.0 193 32.6
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 5.4e-11 72.0 200 32.0
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 2.7e-10 69.7 196 33.7
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 3.5e-10 69.3 176 33.5
Gohir.D07G155080 Gossypium hirsutum HOM05D008367 ORTHO05D010529 1.7e-09 67.0 166 33.1
Gorai.001G177400 Gossypium raimondii HOM05D008367 ORTHO05D010529 1.7e-09 67.0 166 33.1
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 3.0e-09 66.2 188 31.4
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 3.9e-09 65.9 86 40.7
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 3.9e-09 65.9 99 44.4
Gohir.A07G148700 Gossypium hirsutum HOM05D008367 ORTHO05D010529 3.9e-09 65.9 166 33.1
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 5.1e-09 65.5 196 30.1
Psat3g056920 Pisum sativum HOM05D008367 ORTHO05D010529 6.6e-09 65.1 184 29.3
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 6.6e-09 65.1 190 30.5
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.1e-08 64.3 192 31.8
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 2.5e-08 63.2 86 45.3
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 3.3e-08 62.8 176 34.1
Medtr7g096950 Medicago truncatula HOM05D008367 ORTHO05D010529 1.2e-07 60.8 192 28.1
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 1.2e-07 60.8 189 29.1
Thecc.01G258200 Theobroma cacao HOM05D008367 ORTHO05D010529 1.6e-07 60.5 186 30.6
Duzib133G0413 Durio zibethinus HOM05D008367 ORTHO05D010529 2.1e-07 60.1 201 31.8
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 3.6e-07 59.3 193 27.5
Lalb_Chr01g0012251 Lupinus albus HOM05D008367 ORTHO05D010529 4.7e-07 58.9 182 30.2
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 4.7e-07 58.9 191 28.3
VMungo1383G3617 Vigna mungo HOM05D008367 ORTHO05D010529 6.2e-07 58.5 180 30.6
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 8.1e-07 58.2 190 27.4
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 1.4e-06 57.4 181 30.9
COL.COLO4_05894 Corchorus olitorius HOM05D008367 ORTHO05D010529 1.4e-06 57.4 197 31.5
CAN.G896.7 Capsicum annuum HOM05D008367 ORTHO05D010529 1.8e-06 57.0 185 25.9
Rhsim13G0035000 Rhododendron simsii HOM05D008367 ORTHO05D010529 2.4e-06 56.6 201 27.4
CDE02G1593 Ceratophyllum demersum HOM05D045424 ORTHO05D009350 4.0e-06 55.8 205 29.3
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 4.0e-06 55.8 135 33.3
Rhsim01G0263900 Rhododendron simsii HOM05D008367 ORTHO05D010529 5.2e-06 55.5 203 30.5


User provided reference genes

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