Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022898 Carpinus fangiana HOM05D004408 ORTHO05D124787 0.0e+00 3862.8 2075 100.0
Cfa022881 Carpinus fangiana HOM05D004408 ORTHO05D122047 1.4e-54 220.3 332 38.9
SMO169G0216 Selaginella moellendorffii HOM05D004408 ORTHO05D005486 4.3e-40 172.2 1228 22.1
COL.COLO4_15257 Corchorus olitorius HOM05D004408 ORTHO05D005486 1.3e-36 160.6 1268 22.2
MD04G1218000 Malus domestica HOM05D004408 ORTHO05D005486 9.2e-35 154.5 1254 22.2
Duzib177G0039 Durio zibethinus HOM05D004408 ORTHO05D005486 2.1e-34 153.3 1265 21.3
Potri.013G035100 Populus trichocarpa HOM05D004408 ORTHO05D005486 1.7e-33 150.2 1610 20.8
Gohir.A11G256300 Gossypium hirsutum HOM05D004408 ORTHO05D005486 5.1e-33 148.7 1228 21.2
Prupe.6G338000 Prunus persica HOM05D004408 ORTHO05D005486 2.5e-32 146.4 1260 21.7
AUR62005003 Chenopodium quinoa HOM05D004408 ORTHO05D005486 4.3e-32 145.6 1260 21.6
Thecc.05G290600 Theobroma cacao HOM05D004408 ORTHO05D005486 4.3e-32 145.6 1266 21.0
Gorai.007G286000 Gossypium raimondii HOM05D004408 ORTHO05D005486 7.3e-32 144.8 1267 21.5
Gohir.D11G266000 Gossypium hirsutum HOM05D004408 ORTHO05D005486 1.6e-31 143.7 1228 20.8
Glyma.20G229100 Glycine max HOM05D004408 ORTHO05D005486 2.1e-31 143.3 1261 20.8
Aqoxy2G03396 Aquilegia oxysepala HOM05D004408 ORTHO05D005486 2.8e-31 142.9 1271 21.7
Nn1g02333 Nelumbo nucifera HOM05D004408 ORTHO05D005486 4.7e-31 142.1 1262 21.4
Ah.04g162440 Amaranthus hybridus HOM05D004408 ORTHO05D005486 8.1e-31 141.4 1392 21.2
A06p37770 Brassica napus HOM05D004408 ORTHO05D005486 8.1e-31 141.4 1265 20.5
C07p40460 Brassica napus HOM05D004408 ORTHO05D005486 1.8e-30 140.2 1505 20.0
BolC7t44581H Brassica oleracea HOM05D004408 ORTHO05D005486 1.8e-30 140.2 1505 20.0
Phvul.007G184950 Phaseolus vulgaris HOM05D004408 ORTHO05D005486 1.8e-30 140.2 1264 20.8
Lj5g0005673 Lotus japonicus HOM05D004408 ORTHO05D005486 2.3e-30 139.8 1267 21.0
CANSAT54G0296 Cannabis sativa HOM05D004408 ORTHO05D005486 3.1e-30 139.4 1543 20.5
Glyma.10G159500 Glycine max HOM05D004408 ORTHO05D005486 1.2e-29 137.5 1261 20.9
TWI56G0724 Tripterygium wilfordii HOM05D004408 ORTHO05D005486 1.2e-29 137.5 1265 21.1
BcaNung04259 Brassica carinata HOM05D004408 ORTHO05D005486 2.0e-29 136.7 1501 19.9
Manes.09G157400 Manihot esculenta HOM05D004408 ORTHO05D005486 2.0e-29 136.7 1262 21.6
Eucgr.B01725 Eucalyptus grandis HOM05D004408 ORTHO05D005486 5.8e-29 135.2 1374 20.6
Carub.0006s2545 Capsella rubella HOM05D004408 ORTHO05D005486 7.5e-29 134.8 1262 21.2
FvH4_6g10420 Fragaria vesca HOM05D004408 ORTHO05D005486 1.7e-28 133.7 1263 21.7
C02p57800 Brassica napus HOM05D004408 ORTHO05D005486 2.2e-28 133.3 1250 21.0
Ciclev10000022m.g Citrus clementina HOM05D004408 ORTHO05D005486 2.2e-28 133.3 1257 21.0
SalBow8G3789 Salvia bowleyana HOM05D004408 ORTHO05D005486 2.2e-28 133.3 1252 20.9
Sopen09g011530 Solanum pennellii HOM05D004408 ORTHO05D005486 2.2e-28 133.3 1261 21.0
BcaB07g34188 Brassica carinata HOM05D004408 ORTHO05D005486 2.9e-28 132.9 1261 20.4
BcaC03g17767 Brassica carinata HOM05D004408 ORTHO05D005486 4.9e-28 132.1 1250 20.9
BraA02t08826Z Brassica rapa HOM05D004408 ORTHO05D005486 4.9e-28 132.1 1220 20.9
A02p38480 Brassica napus HOM05D004408 ORTHO05D005486 6.4e-28 131.7 1249 20.9
BraA06t26696Z Brassica rapa HOM05D004408 ORTHO05D005486 6.4e-28 131.7 1285 20.2
CsaV3_1G039670 Cucumis sativus L. HOM05D004408 ORTHO05D005486 6.4e-28 131.7 1235 20.3
AagrBONN_evm.TU.Sc2ySwM_228.3627 Anthoceros agrestis HOM05D004408 ORTHO05D005486 8.3e-28 131.3 1299 21.8
THA.LOC104818650 Tarenaya hassleriana HOM05D004408 ORTHO05D005486 1.4e-27 130.6 1256 20.4
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.9e-27 130.2 1299 21.7
Medtr1g081710 Medicago truncatula HOM05D004408 ORTHO05D005486 4.1e-27 129.0 1268 20.0
TAR365G0706 Trochodendron aralioides HOM05D004408 ORTHO05D005486 4.1e-27 129.0 1269 21.1
Ca_10066_v3 Cicer arietinum L. HOM05D004408 ORTHO05D005486 5.4e-27 128.6 1270 20.2
MELO3C015391.2 Cucumis melo HOM05D004408 ORTHO05D005486 5.4e-27 128.6 1233 20.4
ECA232G0933 Erigeron canadensis HOM05D004408 ORTHO05D005486 7.1e-27 128.3 1255 21.3
HanXRQChr11g0322991 Helianthus annuus HOM05D004408 ORTHO05D005486 7.1e-27 128.3 1254 21.1
Sp2g20340 Schrenkiella parvula HOM05D004408 ORTHO05D005486 1.2e-26 127.5 1258 21.2
CAN.G167.11 Capsicum annuum HOM05D004408 ORTHO05D005486 1.6e-26 127.1 1261 20.2
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-26 127.1 1299 21.5
AT5G27970 Arabidopsis thaliana HOM05D004408 ORTHO05D005486 2.7e-26 126.3 1258 20.7
BolC2t11853H Brassica oleracea HOM05D004408 ORTHO05D005486 2.7e-26 126.3 1232 20.9
CBR_g18881 Chara braunii HOM05D004408 ORTHO05D005486 2.7e-26 126.3 1430 21.2
AL6G40140 Arabidopsis lyrata HOM05D004408 ORTHO05D005486 4.6e-26 125.6 1258 20.7
Thhalv10003510m.g Eutrema salsugineum HOM05D004408 ORTHO05D005486 6.0e-26 125.2 1258 21.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.0e-26 125.2 1264 21.2
Mapoly0167s0007 Marchantia polymorpha HOM05D004408 ORTHO05D005486 7.8e-26 124.8 1308 21.3
TPR.G11136 Trifolium pratense HOM05D004408 ORTHO05D005486 1.0e-25 124.4 1268 20.0
Dinv05121 Davidia involucrata HOM05D004408 ORTHO05D005486 1.3e-25 124.0 1067 20.3
MSTRG.20441 Avicennia marina HOM05D004408 ORTHO05D005486 2.3e-25 123.2 1257 20.1
PSO210G7697 Papaver somniferum HOM05D004408 ORTHO05D005486 5.1e-25 122.1 1257 21.0
Sc06g0003710 Simmondsia chinensis HOM05D004408 ORTHO05D005486 8.6e-25 121.3 1262 21.2
arahy.Tifrunner.gnm1.ann1.4PM453 Arachis hypogaea HOM05D004408 ORTHO05D005486 1.1e-24 120.9 1151 20.9
DCAR_001927 Daucus carota HOM05D004408 ORTHO05D005486 3.3e-24 119.4 711 23.3
Pp3c17_790 Physcomitrium patens HOM05D004408 ORTHO05D005486 4.3e-24 119.0 1279 21.0
ATR0697G205 Amborella trichopoda HOM05D004408 ORTHO05D005486 5.6e-24 118.6 1267 21.0
Sed0014385 Sechium edule HOM05D004408 ORTHO05D005486 5.6e-24 118.6 1162 20.6
Aa31LG11G8830 Aethionema arabicum HOM05D004408 ORTHO05D005486 7.3e-24 118.2 1259 20.6
EL10Ac4g09198 Beta vulgaris HOM05D004408 ORTHO05D005486 7.3e-24 118.2 996 20.9
VMungo0720G1928 Vigna mungo HOM05D004408 ORTHO05D005486 1.2e-23 117.5 1310 20.5
PGR083G2727 Punica granatum HOM05D004408 ORTHO05D005486 2.8e-23 116.3 1273 20.3
Migut.B01071 Erythranthe guttata HOM05D004408 ORTHO05D005486 3.6e-23 115.9 1529 19.8
QL03p022358 Quercus lobata HOM05D004408 ORTHO05D005486 4.7e-23 115.5 1335 20.1
Lsat_1_v5_gn_4_142681 Lactuca sativa HOM05D004408 ORTHO05D005486 6.2e-23 115.2 1230 20.7
MBI05_g21270_MAGBIO Magnolia biondii HOM05D004408 ORTHO05D005486 8.1e-23 114.8 730 22.7
Solyc09g018370.4 Solanum lycopersicum HOM05D004408 ORTHO05D005486 2.4e-22 113.2 707 21.9
ClCG03G016280 Citrullus lanatus HOM05D004408 ORTHO05D005486 8.9e-22 111.3 1232 20.5
CSS0009913 Camellia sinensis var. sinensis HOM05D004408 ORTHO05D005486 1.2e-21 110.9 596 22.7
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 2.0e-21 110.2 1309 21.2
AUR62000963 Chenopodium quinoa HOM05D004408 ORTHO05D005486 5.8e-21 108.6 723 21.7
Atru.chr2.666 Acer truncatum HOM05D004408 ORTHO05D005486 9.9e-21 107.8 602 22.1
Nitab4.5_0000162g0030 Nicotiana tabacum HOM05D004408 ORTHO05D005486 1.3e-20 107.5 713 22.2
Peaxi162Scf01040g00010 Petunia axillaris HOM05D004408 ORTHO05D005486 1.7e-20 107.1 594 22.7
Rhsim05G0150300 Rhododendron simsii HOM05D004408 ORTHO05D005486 2.9e-20 106.3 750 21.6
CSS0006895 Camellia sinensis var. sinensis HOM05D004408 ORTHO05D005486 3.8e-20 105.9 596 22.3
Cc02_g31380 Coffea canephora HOM05D004408 ORTHO05D005486 4.2e-19 102.4 718 22.4
RcHm_v2.0_Chr3g0461321 Rosa chinensis HOM05D004408 ORTHO05D005486 1.6e-18 100.5 602 21.9
CiPaw.07G007800 Carya illinoinensis HOM05D004408 ORTHO05D005486 6.0e-18 98.6 1281 20.7
Lalb_Chr06g0167911 Lupinus albus HOM05D004408 ORTHO05D005486 7.8e-18 98.2 599 21.0
PSO761G0213 Papaver somniferum HOM05D004408 ORTHO05D005486 7.8e-18 98.2 596 21.1
GSVIVG01021873001 Vitis vinifera HOM05D004408 ORTHO05D005486 1.0e-17 97.8 1303 20.0
CARHR185700 Cardamine hirsuta HOM05D004408 ORTHO05D005486 1.7e-17 97.1 335 23.9
Psat6g147800 Pisum sativum HOM05D004408 ORTHO05D005486 5.1e-17 95.5 609 20.4
Cpa.g.sc117.51 Carica papaya HOM05D004408 ORTHO05D005486 6.6e-17 95.1 444 21.8
HPP92_012122 Vanilla planifolia HOM05D004408 ORTHO05D005486 8.7e-17 94.7 315 24.1
Lalb_Chr21g0310861 Lupinus albus HOM05D004408 ORTHO05D005486 3.3e-16 92.8 602 20.1
vmacro19678 Vaccinium macrocarpon HOM05D004408 ORTHO05D005486 3.3e-16 92.8 337 24.6
FAN05G3761 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-15 90.5 336 22.6
Hund06994 Selenicereus undatus HOM05D004408 ORTHO05D005486 3.6e-15 89.4 360 22.8
SHI08350 Sapria himalayana HOM05D004408 ORTHO05D005486 3.1e-14 86.3 616 21.3
arahy.Tifrunner.gnm1.ann1.L7F5GT Arachis hypogaea HOM05D004408 ORTHO05D005486 4.0e-14 85.9 423 20.8
MCO03G609 Micromonas commoda HOM05D004408 ORTHO05D005486 2.6e-13 83.2 617 21.4
Cfa006478 Carpinus fangiana HOM05D004408 ORTHO05D005486 4.4e-13 82.4 735 19.7
Os01g0772700 Oryza sativa ssp. japonica HOM05D004408 ORTHO05D005486 5.8e-13 82.0 486 19.3
HPP92_012130 Vanilla planifolia HOM05D004408 ORTHO05D005486 2.2e-12 80.1 435 20.2
CBR_g23067 Chara braunii HOM05D004408 ORTHO05D005486 1.9e-11 77.0 342 24.9
unitig_0.g2223 Utricularia gibba HOM05D004408 ORTHO05D005486 3.2e-11 76.3 353 21.8
PRCOL_00003187 Prasinoderma coloniale HOM05D004408 ORTHO05D005486 9.3e-11 74.7 1019 21.0
arahy.Tifrunner.gnm1.ann1.N9X86H Arachis hypogaea HOM05D004408 ORTHO05D005486 1.6e-10 73.9 384 23.4
CDE10G0751 Ceratophyllum demersum HOM05D004408 ORTHO05D005486 1.6e-10 73.9 1264 18.7
Lj7A478T84 Lonicera japonica HOM05D004408 ORTHO05D005486 4.3e-08 65.9 248 23.0
Haze_04313 Corylus avellana HOM05D004408 ORTHO05D005486 1.8e-06 60.5 250 21.6
AUR62038332 Chenopodium quinoa HOM05D000528 ORTHO05D000999 5.3e-06 58.9 337 20.8
QL08p006198 Quercus lobata HOM05D004408 ORTHO05D005486 5.3e-06 58.9 396 18.7
Cre13.g575250 Chlamydomonas reinhardtii HOM05D004408 ORTHO05D005486 9.0e-06 58.2 120 30.0


User provided reference genes

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