Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 6.4e-84 314.3 192 100.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.6e-10 70.5 156 35.9
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.1e-10 70.1 156 35.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 6.1e-10 68.6 168 38.7
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 6.1e-10 68.6 161 36.0
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 6.1e-10 68.6 161 34.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.4e-09 67.4 160 35.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.4e-09 67.4 155 37.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.4e-09 67.4 168 35.1
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.8e-09 67.0 161 34.8
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.3e-09 66.6 155 36.8
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.1e-09 66.2 160 35.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.1e-09 66.2 156 35.3
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 4.0e-09 65.9 160 36.2
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 5.2e-09 65.5 163 36.2
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 5.2e-09 65.5 160 35.0
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 5.2e-09 65.5 168 33.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.2e-09 65.5 161 36.6
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.2e-09 65.5 156 35.3
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 6.8e-09 65.1 161 34.8
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 6.8e-09 65.1 163 36.8
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 6.8e-09 65.1 161 35.4
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 8.9e-09 64.7 157 35.7
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.2e-08 64.3 160 35.0
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.5e-08 63.9 160 35.0
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.5e-08 63.9 161 34.8
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.5e-08 63.9 156 34.6
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.5e-08 63.9 161 36.0
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.5e-08 63.9 160 35.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 2.0e-08 63.5 160 34.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.6e-08 63.2 168 33.9
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.6e-08 63.2 158 35.4
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.4e-08 62.8 163 36.2
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 3.4e-08 62.8 162 33.3
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.4e-08 62.4 115 42.6
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.4e-08 62.4 115 42.6
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 4.4e-08 62.4 161 34.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 5.8e-08 62.0 173 33.5
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 5.8e-08 62.0 156 34.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 7.5e-08 61.6 163 35.6
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.5e-08 61.6 169 29.6
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.8e-08 61.2 163 35.6
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 9.8e-08 61.2 160 33.8
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 9.8e-08 61.2 160 34.4
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 9.8e-08 61.2 160 34.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.3e-07 60.8 161 34.2
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.3e-07 60.8 158 35.4
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-07 60.5 155 33.5
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.7e-07 60.5 163 35.0
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.7e-07 60.5 157 34.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.7e-07 60.5 153 34.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.2e-07 60.1 163 35.0
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.2e-07 60.1 160 33.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.2e-07 60.1 159 34.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.2e-07 60.1 160 31.9
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.9e-07 59.7 154 33.1
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.9e-07 59.7 154 33.1
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.9e-07 59.7 162 33.3
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.7e-07 59.3 161 34.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.7e-07 59.3 158 34.2
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.9e-07 58.9 157 35.7
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.4e-07 58.5 157 35.7
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 6.4e-07 58.5 161 31.7
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 6.4e-07 58.5 156 34.6
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 8.3e-07 58.2 153 35.3
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.3e-07 58.2 156 32.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.1e-06 57.8 160 33.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.1e-06 57.8 161 33.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.4e-06 57.4 156 35.9
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.9e-06 57.0 174 31.6
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.9e-06 57.0 164 32.9
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.4e-06 56.6 108 39.8
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 3.2e-06 56.2 155 32.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.1e-06 55.8 163 31.9
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 4.1e-06 55.8 153 35.3
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.4e-06 55.5 162 33.3
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.0e-06 55.1 153 34.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.2e-06 54.7 158 31.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 9.2e-06 54.7 163 31.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.2e-06 54.7 149 30.9
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 9.2e-06 54.7 160 33.1


User provided reference genes

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