Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022788 Carpinus fangiana HOM05D006867 ORTHO05D008676 0.0e+00 1328.5 679 100.0
Pp3c11_2510 Physcomitrium patens HOM05D006867 ORTHO05D008676 8.8e-27 126.3 449 27.8
Mapoly0002s0219 Marchantia polymorpha HOM05D006867 ORTHO05D008676 8.2e-25 119.8 486 25.7
SMO331G0055 Selaginella moellendorffii HOM05D006867 ORTHO05D008676 8.2e-25 119.8 426 25.8
AagrBONN_evm.TU.Sc2ySwM_344.4360 Anthoceros agrestis HOM05D006867 ORTHO05D008676 9.1e-24 116.3 284 30.3
Pp3c1_12740 Physcomitrium patens HOM05D006867 ORTHO05D008676 2.6e-23 114.8 304 28.0
CBR_g36359 Chara braunii HOM05D006867 ORTHO05D008676 7.7e-23 113.2 288 31.2
Cre11.g467639 Chlamydomonas reinhardtii HOM05D006867 ORTHO05D008676 6.5e-22 110.2 472 27.8
TAR629G2918 Trochodendron aralioides HOM05D006867 ORTHO05D008676 7.2e-21 106.7 378 25.1
Hund00158 Selenicereus undatus HOM05D006867 ORTHO05D008676 1.4e-19 102.4 454 23.6
A05p00940 Brassica napus HOM05D006867 ORTHO05D008676 2.3e-19 101.7 414 24.6
HPP92_013529 Vanilla planifolia HOM05D006867 ORTHO05D008676 3.0e-19 101.3 378 25.9
HanXRQChr17g0542101 Helianthus annuus HOM05D006867 ORTHO05D008676 4.0e-19 100.9 422 23.9
PRCOL_00004033 Prasinoderma coloniale HOM05D006867 ORTHO05D008676 5.2e-19 100.5 299 29.8
ATR0824G236 Amborella trichopoda HOM05D006867 ORTHO05D008676 6.7e-19 100.1 385 24.9
AL4G46360 Arabidopsis lyrata HOM05D006867 ORTHO05D008676 6.7e-19 100.1 499 22.0
Actinidia08011 Actinidia chinensis HOM05D006867 ORTHO05D008676 8.8e-19 99.8 422 24.4
Rhsim04G0175800 Rhododendron simsii HOM05D006867 ORTHO05D008676 8.8e-19 99.8 386 25.6
CsaV3_3G007140 Cucumis sativus L. HOM05D006867 ORTHO05D008676 1.5e-18 99.0 425 24.7
Prupe.2G203900 Prunus persica HOM05D006867 ORTHO05D008676 1.5e-18 99.0 297 29.6
vmacro08516 Vaccinium macrocarpon HOM05D006867 ORTHO05D008676 3.3e-18 97.8 443 26.0
CARHR142250 Cardamine hirsuta HOM05D006867 ORTHO05D008676 5.7e-18 97.1 432 23.8
Lj3g0022605 Lotus japonicus HOM05D006867 ORTHO05D008676 7.5e-18 96.7 438 25.1
PSO782G1247 Papaver somniferum HOM05D006867 ORTHO05D008676 7.5e-18 96.7 432 24.1
Hma1.2p1_0074F.1_g039020 Hydrangea macrophylla HOM05D006867 ORTHO05D008676 9.7e-18 96.3 388 24.7
Gorai.008G133000 Gossypium raimondii HOM05D006867 ORTHO05D008676 1.3e-17 95.9 410 22.4
Lj9A610G56 Lonicera japonica HOM05D006867 ORTHO05D008676 1.3e-17 95.9 439 22.3
Sopen08g006420 Solanum pennellii HOM05D006867 ORTHO05D008676 1.3e-17 95.9 422 23.9
Aqoxy5G04385 Aquilegia oxysepala HOM05D006867 ORTHO05D008676 1.7e-17 95.5 513 22.6
HanXRQChr15g0480381 Helianthus annuus HOM05D006867 ORTHO05D008676 1.7e-17 95.5 532 22.9
Sed0008932 Sechium edule HOM05D006867 ORTHO05D008676 1.7e-17 95.5 386 24.9
AT2G46900 Arabidopsis thaliana HOM05D006867 ORTHO05D008676 2.2e-17 95.1 435 23.2
arahy.Tifrunner.gnm1.ann1.L7530T Arachis hypogaea HOM05D006867 ORTHO05D008676 2.2e-17 95.1 381 24.9
arahy.Tifrunner.gnm1.ann1.Y7T28V Arachis hypogaea HOM05D006867 ORTHO05D008676 2.2e-17 95.1 381 24.9
Cc00_g15760 Coffea canephora HOM05D006867 ORTHO05D008676 2.2e-17 95.1 450 24.9
Gohir.A12G118400 Gossypium hirsutum HOM05D006867 ORTHO05D008676 2.2e-17 95.1 410 22.4
Medtr8g023750 Medicago truncatula HOM05D006867 ORTHO05D008676 2.2e-17 95.1 387 24.8
Nitab4.5_0000348g0180 Nicotiana tabacum HOM05D006867 ORTHO05D008676 2.2e-17 95.1 422 23.9
CAN.G90.6 Capsicum annuum HOM05D006867 ORTHO05D008676 2.8e-17 94.7 383 25.6
MBI11_g13783_MAGBIO Magnolia biondii HOM05D006867 ORTHO05D008676 2.8e-17 94.7 475 22.7
Thecc.01G329400 Theobroma cacao HOM05D006867 ORTHO05D008676 2.8e-17 94.7 423 23.9
CANSAT56G2490 Cannabis sativa HOM05D006867 ORTHO05D008676 3.7e-17 94.4 501 23.4
MD07G1165200 Malus domestica HOM05D006867 ORTHO05D008676 3.7e-17 94.4 385 25.5
GSVIVG01027485001 Vitis vinifera HOM05D006867 ORTHO05D008676 3.7e-17 94.4 472 22.2
Thhalv10001357m.g Eutrema salsugineum HOM05D006867 ORTHO05D008676 4.8e-17 94.0 448 22.5
Nitab4.5_0004754g0040 Nicotiana tabacum HOM05D006867 ORTHO05D008676 4.8e-17 94.0 422 23.2
Sp4g28920 Schrenkiella parvula HOM05D006867 ORTHO05D008676 4.8e-17 94.0 422 23.2
COL.COLO4_23081 Corchorus olitorius HOM05D006867 ORTHO05D008676 6.3e-17 93.6 411 23.1
MCO10G037 Micromonas commoda HOM05D006867 ORTHO05D008676 6.3e-17 93.6 348 26.1
VMungo0331G1883 Vigna mungo HOM05D006867 ORTHO05D008676 6.3e-17 93.6 384 25.3
ClCG05G000080 Citrullus lanatus HOM05D006867 ORTHO05D008676 8.2e-17 93.2 419 22.4
Glyma.16G015800 Glycine max HOM05D006867 ORTHO05D008676 8.2e-17 93.2 425 25.2
Aa31LG1G28260 Aethionema arabicum HOM05D006867 ORTHO05D008676 1.4e-16 92.4 429 24.7
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.4e-16 92.4 414 23.7
CANSAT56G0208 Cannabis sativa HOM05D006867 ORTHO05D008676 1.4e-16 92.4 501 23.2
Glyma.07G047300 Glycine max HOM05D006867 ORTHO05D008676 1.8e-16 92.0 425 25.9
Lalb_Chr10g0101011 Lupinus albus HOM05D006867 ORTHO05D008676 1.8e-16 92.0 478 23.8
Lalb_Chr17g0343131 Lupinus albus HOM05D006867 ORTHO05D008676 1.8e-16 92.0 383 24.5
Gohir.D12G122200 Gossypium hirsutum HOM05D006867 ORTHO05D008676 2.4e-16 91.7 377 22.8
Phvul.010G121700 Phaseolus vulgaris HOM05D006867 ORTHO05D008676 2.4e-16 91.7 425 25.4
MD01G1098500 Malus domestica HOM05D006867 ORTHO05D008676 3.1e-16 91.3 381 25.2
TPR.G32787 Trifolium pratense HOM05D006867 ORTHO05D008676 3.1e-16 91.3 386 25.1
BolC4t21761H Brassica oleracea HOM05D006867 ORTHO05D008676 4.1e-16 90.9 414 23.4
Oeu032684.1 Olea europaea HOM05D006867 ORTHO05D008676 4.1e-16 90.9 463 23.3
SGA_v2.0_scaffold122G33256 Striga asiatica HOM05D006867 ORTHO05D008676 7.0e-16 90.1 380 24.7
Eucgr.L00743 Eucalyptus grandis HOM05D006867 ORTHO05D008676 9.1e-16 89.7 273 26.7
Manes.01G237400 Manihot esculenta HOM05D006867 ORTHO05D008676 1.2e-15 89.4 421 22.6
SalBow6G1414 Salvia bowleyana HOM05D006867 ORTHO05D008676 1.2e-15 89.4 386 23.8
Os09g0514900 Oryza sativa ssp. japonica HOM05D006867 ORTHO05D008676 1.6e-15 89.0 431 24.1
Sabra02G0132100 Salix brachista HOM05D006867 ORTHO05D008676 1.6e-15 89.0 296 24.3
FAN10G4369 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.0e-15 88.6 262 25.6
Zm00001eb102740 Zea mays HOM05D006867 ORTHO05D008676 2.0e-15 88.6 431 23.2
FvH4_7g18270 Fragaria vesca HOM05D006867 ORTHO05D008676 2.7e-15 88.2 261 24.5
FAN06G0390 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.7e-15 88.2 261 24.5
FAN06G3784 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.7e-15 88.2 261 24.5
QL08p048171 Quercus lobata HOM05D006867 ORTHO05D008676 2.7e-15 88.2 467 24.0
FAN10G3600 Fragaria x ananassa HOM05D006867 ORTHO05D008676 3.5e-15 87.8 261 24.5
Psat0s2980g0160 Pisum sativum HOM05D006867 ORTHO05D008676 5.9e-15 87.0 438 24.0
Ca_23461_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 1.0e-14 86.3 437 24.0
Ca_23474_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 1.0e-14 86.3 437 24.0
Potri.002G183500 Populus trichocarpa HOM05D006867 ORTHO05D008676 1.0e-14 86.3 421 22.1
RcHm_v2.0_Chr1g0361851 Rosa chinensis HOM05D006867 ORTHO05D008676 1.0e-14 86.3 261 24.5
CiPaw.02G046400 Carya illinoinensis HOM05D006867 ORTHO05D008676 1.3e-14 85.9 382 23.8
Ciclev10019260m.g Citrus clementina HOM05D006867 ORTHO05D008676 1.3e-14 85.9 545 21.1
FAN01G1143 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.3e-14 85.9 261 24.1
FAN03G0961 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.3e-14 85.9 261 24.1
CSS0030251 Camellia sinensis var. sinensis HOM05D006867 ORTHO05D008676 1.7e-14 85.5 387 23.8
Dinv32661 Davidia involucrata HOM05D006867 ORTHO05D008676 1.7e-14 85.5 381 23.6
Sabra14G0080800 Salix brachista HOM05D006867 ORTHO05D008676 2.9e-14 84.7 463 24.2
Migut.I01214 Erythranthe guttata HOM05D006867 ORTHO05D008676 3.8e-14 84.3 435 23.4
Potri.014G109500 Populus trichocarpa HOM05D006867 ORTHO05D008676 3.8e-14 84.3 422 23.7
Cfa003709 Carpinus fangiana HOM05D006867 ORTHO05D008676 5.0e-14 84.0 469 24.3
Haze_15774 Corylus avellana HOM05D006867 ORTHO05D008676 6.5e-14 83.6 471 24.8
MSTRG.10869 Avicennia marina HOM05D006867 ORTHO05D008676 1.1e-13 82.8 380 22.6
Atru.chr5.813 Acer truncatum HOM05D006867 ORTHO05D008676 1.9e-13 82.0 381 21.8
FAN01G0521 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.6e-12 79.0 187 25.7
ECA246G2438 Erigeron canadensis HOM05D006867 ORTHO05D008676 2.1e-12 78.6 424 24.5
Peaxi162Scf01205g00180 Petunia axillaris HOM05D006867 ORTHO05D008676 1.1e-08 66.2 148 25.0
Solyc08g016090.4 Solanum lycopersicum HOM05D006867 ORTHO05D008676 5.0e-06 57.4 98 28.6


User provided reference genes

Program Settings