Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.2e-97 359.0 184 100.0
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.2e-25 119.8 150 44.7
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.1e-23 113.2 150 44.7
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.7e-23 112.8 150 44.7
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 3.6e-23 112.5 150 43.3
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 7.9e-23 111.3 150 41.3
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.0e-22 110.9 150 42.0
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.0e-22 110.9 150 42.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.4e-22 110.5 148 44.6
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.8e-22 110.2 149 43.0
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.8e-22 110.2 150 43.3
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 2.3e-22 109.8 150 43.3
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 2.3e-22 109.8 150 42.7
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.3e-22 109.8 150 42.0
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 3.0e-22 109.4 150 42.0
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 3.0e-22 109.4 150 40.7
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 5.1e-22 108.6 152 38.8
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 5.1e-22 108.6 129 44.2
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 5.1e-22 108.6 150 42.0
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 5.1e-22 108.6 150 41.3
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 5.1e-22 108.6 148 45.3
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.7e-22 108.2 144 45.1
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.7e-22 108.2 150 40.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 8.8e-22 107.8 150 41.3
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.1e-21 107.5 148 44.6
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.5e-21 107.1 150 39.3
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.5e-21 107.1 150 40.7
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.0e-21 106.7 150 40.0
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 2.0e-21 106.7 150 40.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.0e-21 106.7 150 40.7
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 2.5e-21 106.3 150 40.0
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 3.3e-21 105.9 171 40.9
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 3.3e-21 105.9 124 43.5
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 3.3e-21 105.9 126 44.4
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 4.3e-21 105.5 150 44.0
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 4.3e-21 105.5 150 40.7
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 4.3e-21 105.5 150 42.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 4.3e-21 105.5 150 40.7
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 4.3e-21 105.5 129 45.0
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 4.3e-21 105.5 150 42.7
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 5.7e-21 105.1 150 40.7
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 5.7e-21 105.1 149 40.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 7.4e-21 104.8 150 41.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 7.4e-21 104.8 150 41.3
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 7.4e-21 104.8 150 42.0
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 7.4e-21 104.8 149 41.6
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 9.7e-21 104.4 150 39.3
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 9.7e-21 104.4 150 42.0
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 9.7e-21 104.4 150 41.3
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 9.7e-21 104.4 150 40.7
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.7e-20 103.6 150 40.0
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.7e-20 103.6 150 40.0
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 1.7e-20 103.6 150 42.7
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.7e-20 103.6 125 44.0
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.2e-20 103.2 150 40.7
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.2e-20 103.2 150 40.7
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.2e-20 103.2 148 42.6
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 2.8e-20 102.8 148 41.9
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.8e-20 102.8 150 40.0
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.7e-20 102.4 150 41.3
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 4.8e-20 102.1 130 46.2
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 4.8e-20 102.1 150 40.7
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.8e-20 102.1 150 40.0
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 4.8e-20 102.1 148 43.2
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 6.3e-20 101.7 150 39.3
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 6.3e-20 101.7 144 43.8
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 6.3e-20 101.7 150 40.7
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 8.2e-20 101.3 150 41.3
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.2e-20 101.3 150 40.7
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 8.2e-20 101.3 157 39.5
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.2e-20 101.3 150 39.3
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.4e-19 100.5 150 39.3
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.4e-19 100.5 145 43.4
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.4e-19 100.5 150 40.7
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.4e-19 100.5 150 40.7
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.4e-19 100.5 150 40.7
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.4e-19 100.5 148 43.2
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.4e-19 100.5 150 39.3
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.8e-19 100.1 150 40.7
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 3.1e-19 99.4 153 44.4
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 3.1e-19 99.4 148 40.5
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 3.1e-19 99.4 148 40.5
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 5.3e-19 98.6 150 38.0
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 9.1e-19 97.8 166 38.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.1e-19 97.8 171 38.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.1e-19 97.8 171 38.0
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.2e-18 97.4 148 42.6
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.4e-18 95.9 148 42.6
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.0e-17 94.4 123 43.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 2.9e-17 92.8 150 38.0
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 3.8e-17 92.4 162 38.3
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.1e-16 90.9 184 34.8
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 5.5e-16 88.6 150 37.3
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 5.5e-16 88.6 150 37.3
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 5.5e-16 88.6 106 44.3
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.8e-14 83.6 148 39.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.0e-14 82.8 150 38.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.1e-13 80.9 114 45.6
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.5e-13 80.5 135 37.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.6e-13 79.7 125 41.6
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 9.7e-13 77.8 93 47.3
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.7e-12 77.0 102 44.1
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 6.3e-12 75.1 150 34.7
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.6e-10 69.7 149 30.2
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 7.7e-10 68.2 99 36.4
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.5e-08 63.9 83 43.4
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.0e-06 57.8 87 41.4
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.4e-06 57.4 72 45.8


User provided reference genes

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