Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.3e-100 369.8 188 100.0
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 4.1e-27 125.6 164 50.0
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.7e-26 122.9 157 48.4
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.3e-24 115.9 157 47.1
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 3.3e-24 115.9 162 44.4
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 4.3e-24 115.5 162 46.3
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 5.6e-24 115.2 162 44.4
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 5.6e-24 115.2 157 44.6
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 7.3e-24 114.8 163 44.2
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 7.3e-24 114.8 164 43.3
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.6e-23 113.6 166 42.8
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 2.8e-23 112.8 162 43.8
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.6e-23 112.5 165 43.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.6e-23 112.5 163 44.8
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 4.7e-23 112.1 157 43.9
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 4.7e-23 112.1 166 43.4
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 6.2e-23 111.7 162 43.2
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.2e-23 111.7 157 43.9
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 8.1e-23 111.3 157 45.2
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.1e-23 111.3 162 43.2
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 8.1e-23 111.3 162 44.4
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 8.1e-23 111.3 159 43.4
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 8.1e-23 111.3 157 44.6
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 8.1e-23 111.3 162 44.4
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.1e-22 110.9 157 43.9
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-22 110.9 162 43.2
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-22 110.9 162 43.2
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 1.1e-22 110.9 159 44.7
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 1.1e-22 110.9 159 44.7
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.4e-22 110.5 164 42.1
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.8e-22 110.2 162 43.2
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.8e-22 110.2 157 43.9
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.8e-22 110.2 139 46.8
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 2.4e-22 109.8 162 43.2
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 2.4e-22 109.8 162 43.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 2.4e-22 109.8 159 44.7
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 2.4e-22 109.8 139 46.0
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 2.4e-22 109.8 164 41.5
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.4e-22 109.8 159 43.4
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 3.1e-22 109.4 157 44.6
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 3.1e-22 109.4 159 44.7
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 3.1e-22 109.4 139 45.3
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 4.0e-22 109.0 159 43.4
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 5.2e-22 108.6 159 43.4
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 5.2e-22 108.6 162 43.8
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 5.2e-22 108.6 164 44.5
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 6.9e-22 108.2 157 42.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 6.9e-22 108.2 157 45.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 9.0e-22 107.8 164 43.3
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 9.0e-22 107.8 163 45.4
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 9.0e-22 107.8 157 44.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 9.0e-22 107.8 162 42.6
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 9.0e-22 107.8 162 42.6
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.2e-21 107.5 162 44.4
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.5e-21 107.1 139 48.2
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.5e-21 107.1 157 43.9
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.5e-21 107.1 165 41.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 2.0e-21 106.7 162 42.6
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 2.0e-21 106.7 166 41.0
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.6e-21 106.3 157 42.7
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.6e-21 106.3 145 43.4
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 2.6e-21 106.3 165 40.6
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 3.4e-21 105.9 162 42.0
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 4.4e-21 105.5 162 42.0
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 5.8e-21 105.1 164 42.7
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 5.8e-21 105.1 162 42.0
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 7.6e-21 104.8 162 41.4
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 7.6e-21 104.8 165 40.0
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 7.6e-21 104.8 164 42.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 7.6e-21 104.8 159 42.1
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 9.9e-21 104.4 162 42.0
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 9.9e-21 104.4 162 42.0
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 9.9e-21 104.4 162 42.0
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 9.9e-21 104.4 165 40.0
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 9.9e-21 104.4 167 40.7
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 9.9e-21 104.4 164 42.1
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.3e-20 104.0 157 43.3
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.3e-20 104.0 157 43.3
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.3e-20 104.0 157 42.7
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.3e-20 104.0 159 40.3
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.7e-20 103.6 139 44.6
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.7e-20 103.6 162 41.4
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.7e-20 103.6 162 41.4
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.7e-20 103.6 162 42.0
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.2e-20 103.2 159 40.3
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.2e-20 103.2 162 43.2
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.9e-20 102.8 162 40.1
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.9e-20 102.8 162 40.1
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.9e-20 102.8 169 40.2
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.9e-20 102.8 159 40.3
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 4.9e-20 102.1 156 42.9
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 6.4e-20 101.7 157 42.7
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 6.4e-20 101.7 157 42.0
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 6.4e-20 101.7 166 39.8
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 6.4e-20 101.7 162 41.4
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 6.4e-20 101.7 165 40.0
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 8.4e-20 101.3 169 40.8
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.4e-19 99.8 159 40.9
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 5.4e-19 98.6 158 40.5
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 9.3e-19 97.8 148 41.9
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 2.1e-18 96.7 143 44.1
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 2.1e-18 96.7 166 39.2
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.6e-15 85.9 153 41.2
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.4e-14 83.2 116 42.2
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 4.9e-12 75.5 133 35.3
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.4e-11 73.2 64 56.2
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.4e-11 72.0 116 38.8
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.6e-10 68.9 59 59.3
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.9e-08 63.5 133 35.3
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 2.1e-07 60.1 46 67.4
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 4.8e-07 58.9 63 50.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 6.2e-07 58.5 54 55.6
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 2.4e-06 56.6 44 61.4


User provided reference genes

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