Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022620 Carpinus fangiana HOM05D001353 ORTHO05D013162 3.5e-211 738.0 375 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2049 Anthoceros agrestis HOM05D001353 ORTHO05D013162 2.0e-57 227.3 281 44.5
AagrBONN_evm.TU.Sc2ySwM_228.5585 Anthoceros agrestis HOM05D001353 ORTHO05D013162 3.8e-56 223.0 312 41.7
Pp3c22_7030 Physcomitrium patens HOM05D001353 ORTHO05D013162 6.5e-56 222.2 284 45.1
Mapoly0030s0069 Marchantia polymorpha HOM05D001353 ORTHO05D013162 1.2e-54 218.0 285 43.2
SEGI_36398 Sequoiadendron giganteum HOM05D001353 ORTHO05D013162 2.7e-54 216.9 286 44.8
CBR_g48193 Chara braunii HOM05D001353 ORTHO05D013162 6.7e-53 212.2 291 43.3
SMO172G0193 Selaginella moellendorffii HOM05D001353 ORTHO05D013162 1.4e-50 204.5 254 44.9
Pp3c21_4790 Physcomitrium patens HOM05D001353 ORTHO05D013162 1.3e-48 198.0 218 50.5
PRCOL_00001011 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 2.2e-48 197.2 314 40.4
PRCOL_00002746 Prasinoderma coloniale HOM05D001353 ORTHO05D002359 3.1e-42 176.8 307 36.5
PRCOL_00006801 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 4.5e-41 172.9 276 38.8
Cre16.g663200 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D024952 1.3e-32 144.8 266 33.5
Cre12.g493250 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D024952 8.5e-32 142.1 305 31.1
Cre03.g199050 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D017345 1.9e-31 141.0 278 33.8
Cre10.g443550 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D002359 5.5e-31 139.4 267 32.2
PRCOL_00004954 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 5.2e-29 132.9 208 36.5
Cc06_g10150 Coffea canephora HOM05D001353 ORTHO05D002359 6.8e-29 132.5 295 33.9
MCO16G083 Micromonas commoda HOM05D000207 ORTHO05D024952 6.8e-29 132.5 273 30.4
Lsat_1_v5_gn_8_96380 Lactuca sativa HOM05D001353 ORTHO05D002359 2.6e-28 130.6 322 30.4
Aqoxy7G01509 Aquilegia oxysepala HOM05D001353 ORTHO05D002359 4.4e-28 129.8 294 31.0
GSVIVG01015338001 Vitis vinifera HOM05D001353 ORTHO05D002359 4.4e-28 129.8 286 32.5
TAR383G0479 Trochodendron aralioides HOM05D001353 ORTHO05D002359 7.5e-28 129.0 287 32.8
Duzib168G0382 Durio zibethinus HOM05D001353 ORTHO05D002359 9.8e-28 128.6 301 31.2
Prupe.7G224500 Prunus persica HOM05D001353 ORTHO05D002359 1.3e-27 128.3 302 31.1
Atru.chr7.1420 Acer truncatum HOM05D001353 ORTHO05D002359 2.2e-27 127.5 286 32.9
CBR_g9064 Chara braunii HOM05D001353 ORTHO05D024952 2.2e-27 127.5 231 34.2
FAN26G1003 Fragaria x ananassa HOM05D001353 ORTHO05D002359 2.2e-27 127.5 288 32.6
RcHm_v2.0_Chr2g0091381 Rosa chinensis HOM05D001353 ORTHO05D002359 2.2e-27 127.5 287 32.4
Aa31LG8G17000 Aethionema arabicum HOM05D001353 ORTHO05D002359 2.8e-27 127.1 290 30.0
FvH4_1g05740 Fragaria vesca HOM05D001353 ORTHO05D002359 2.8e-27 127.1 288 32.6
FAN26G1973 Fragaria x ananassa HOM05D001353 ORTHO05D002359 2.8e-27 127.1 288 32.6
AT2G20050 Arabidopsis thaliana HOM05D001353 ORTHO05D002359 3.7e-27 126.7 288 31.6
TWI34G0335 Tripterygium wilfordii HOM05D001353 ORTHO05D002359 3.7e-27 126.7 293 32.4
Manes.16G111900 Manihot esculenta HOM05D001353 ORTHO05D002359 4.9e-27 126.3 324 29.3
Sc14g0000410 Simmondsia chinensis HOM05D001353 ORTHO05D002359 4.9e-27 126.3 288 32.6
Glyma.09G194200 Glycine max HOM05D001353 ORTHO05D002359 6.3e-27 125.9 293 33.1
PRCOL_00003761 Prasinoderma coloniale HOM05D000207 ORTHO05D024952 6.3e-27 125.9 246 32.5
SGA_v2.0_scaffold19G08755 Striga asiatica HOM05D001353 ORTHO05D002359 6.3e-27 125.9 286 32.9
AagrBONN_evm.TU.Sc2ySwM_368.691 Anthoceros agrestis HOM05D001353 ORTHO05D002359 8.3e-27 125.6 284 32.0
A07p00600 Brassica napus HOM05D001353 ORTHO05D002359 8.3e-27 125.6 285 31.2
C07p01090 Brassica napus HOM05D001353 ORTHO05D002359 8.3e-27 125.6 285 31.2
BraA07t27856Z Brassica rapa HOM05D001353 ORTHO05D002359 8.3e-27 125.6 285 31.2
PSO210G1626 Papaver somniferum HOM05D001353 ORTHO05D002359 8.3e-27 125.6 300 30.7
PSO210G3200 Papaver somniferum HOM05D001353 ORTHO05D002359 8.3e-27 125.6 300 30.3
vmacro10875 Vaccinium macrocarpon HOM05D001353 ORTHO05D002359 8.3e-27 125.6 287 32.4
Lalb_Chr22g0352601 Lupinus albus HOM05D001353 ORTHO05D002359 1.1e-26 125.2 288 32.6
QL02p043064 Quercus lobata HOM05D001353 ORTHO05D002359 1.1e-26 125.2 322 29.8
BcaC06g36681 Brassica carinata HOM05D001353 ORTHO05D002359 1.4e-26 124.8 285 31.2
BolC7t40548H Brassica oleracea HOM05D001353 ORTHO05D002359 1.4e-26 124.8 285 31.2
Lj7C659T7 Lonicera japonica HOM05D001353 ORTHO05D002359 1.4e-26 124.8 290 31.4
MCO16G578 Micromonas commoda HOM05D001353 ORTHO05D013162 1.8e-26 124.4 256 32.4
Nn3g18153 Nelumbo nucifera HOM05D001353 ORTHO05D002359 1.8e-26 124.4 291 32.3
AL3G48050 Arabidopsis lyrata HOM05D001353 ORTHO05D002359 2.4e-26 124.0 288 31.2
Lj2g0022100 Lotus japonicus HOM05D001353 ORTHO05D002359 2.4e-26 124.0 294 31.6
Carub.0003s3431 Capsella rubella HOM05D001353 ORTHO05D002359 4.1e-26 123.2 288 30.2
PGR142G4412 Punica granatum HOM05D001353 ORTHO05D002359 4.1e-26 123.2 288 31.2
AUR62010934 Chenopodium quinoa HOM05D001353 ORTHO05D002359 5.4e-26 122.9 299 29.4
Dinv41647 Davidia involucrata HOM05D001353 ORTHO05D002359 7.0e-26 122.5 287 32.8
Hma1.2p1_0945F.1_g240170 Hydrangea macrophylla HOM05D001353 ORTHO05D002359 7.0e-26 122.5 322 29.5
Hma1.2p1_0945F.1_g240180 Hydrangea macrophylla HOM05D001353 ORTHO05D002359 7.0e-26 122.5 322 29.5
Sp3g33360 Schrenkiella parvula HOM05D001353 ORTHO05D002359 7.0e-26 122.5 288 31.2
Thecc.09G104600 Theobroma cacao HOM05D001353 ORTHO05D002359 9.1e-26 122.1 285 32.3
EL10Ac8g18420 Beta vulgaris HOM05D001353 ORTHO05D002359 1.2e-25 121.7 327 29.4
BcaB03g16799 Brassica carinata HOM05D001353 ORTHO05D002359 1.2e-25 121.7 286 31.5
CARHR110520 Cardamine hirsuta HOM05D001353 ORTHO05D002359 1.2e-25 121.7 291 30.6
AUR62021446 Chenopodium quinoa HOM05D001353 ORTHO05D002359 1.2e-25 121.7 299 29.1
Migut.K00517 Erythranthe guttata HOM05D001353 ORTHO05D002359 1.6e-25 121.3 291 30.9
Gorai.010G074600 Gossypium raimondii HOM05D001353 ORTHO05D002359 1.6e-25 121.3 287 31.4
Oeu037985.1 Olea europaea HOM05D001353 ORTHO05D002359 1.6e-25 121.3 286 31.5
SalBow5G1246 Salvia bowleyana HOM05D001353 ORTHO05D002359 1.6e-25 121.3 288 32.3
SalBow5G1616 Salvia bowleyana HOM05D001353 ORTHO05D002359 1.6e-25 121.3 288 32.3
MSTRG.26370 Avicennia marina HOM05D001353 ORTHO05D002359 2.0e-25 120.9 310 31.3
Ca_25556_v3 Cicer arietinum L. HOM05D001353 ORTHO05D002359 2.7e-25 120.6 330 28.8
Ciclev10007299m.g Citrus clementina HOM05D001353 ORTHO05D002359 2.7e-25 120.6 290 30.7
FAN23G0742 Fragaria x ananassa HOM05D001353 ORTHO05D002359 2.7e-25 120.6 295 31.9
Sopen05g015040 Solanum pennellii HOM05D001353 ORTHO05D002359 2.7e-25 120.6 334 29.6
arahy.Tifrunner.gnm1.ann1.MYDP5Z Arachis hypogaea HOM05D001353 ORTHO05D002359 3.5e-25 120.2 297 30.3
COL.COLO4_34797 Corchorus olitorius HOM05D001353 ORTHO05D002359 3.5e-25 120.2 287 31.4
FAN19G3205 Fragaria x ananassa HOM05D001353 ORTHO05D002359 3.5e-25 120.2 295 31.9
FAN28G0622 Fragaria x ananassa HOM05D001353 ORTHO05D002359 3.5e-25 120.2 297 32.0
Glyma.01G146600 Glycine max HOM05D001353 ORTHO05D002359 3.5e-25 120.2 293 31.4
Gohir.A06G065400 Gossypium hirsutum HOM05D001353 ORTHO05D002359 3.5e-25 120.2 287 31.4
SMO119G0320 Selaginella moellendorffii HOM05D001353 ORTHO05D002359 3.5e-25 120.2 269 32.0
Haze_26803 Corylus avellana HOM05D000207 ORTHO05D017345 4.5e-25 119.8 277 31.8
Gohir.D06G064000 Gossypium hirsutum HOM05D001353 ORTHO05D002359 4.5e-25 119.8 287 31.0
Nitab4.5_0000010g0080 Nicotiana tabacum HOM05D001353 ORTHO05D002359 4.5e-25 119.8 321 29.6
Pp3c16_18360 Physcomitrium patens HOM05D001353 ORTHO05D002359 5.9e-25 119.4 245 33.9
Psat1g045440 Pisum sativum HOM05D001353 ORTHO05D002359 5.9e-25 119.4 331 28.4
Solyc05g018300.3 Solanum lycopersicum HOM05D001353 ORTHO05D002359 7.7e-25 119.0 345 29.9
ATR0315G080 Amborella trichopoda HOM05D001353 ORTHO05D002359 1.0e-24 118.6 277 31.0
DCAR_024695 Daucus carota HOM05D001353 ORTHO05D002359 1.3e-24 118.2 288 31.6
arahy.Tifrunner.gnm1.ann1.YNQ283 Arachis hypogaea HOM05D001353 ORTHO05D002359 1.7e-24 117.9 297 30.3
CsaV3_1G019530 Cucumis sativus L. HOM05D001353 ORTHO05D002359 1.7e-24 117.9 361 29.1
TPR.G28826 Trifolium pratense HOM05D001353 ORTHO05D002359 1.7e-24 117.9 292 30.1
Thhalv10001889m.g Eutrema salsugineum HOM05D001353 ORTHO05D002359 2.3e-24 117.5 291 29.6
Nitab4.5_0000952g0070 Nicotiana tabacum HOM05D001353 ORTHO05D002359 2.3e-24 117.5 321 29.0
Peaxi162Scf00539g00036 Petunia axillaris HOM05D001353 ORTHO05D002359 2.9e-24 117.1 286 31.5
CSS0017342 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D002359 3.8e-24 116.7 287 31.0
Cpa.g.sc40.28 Carica papaya HOM05D001353 ORTHO05D002359 3.8e-24 116.7 283 31.1
Cfa003217 Carpinus fangiana HOM05D001353 ORTHO05D002359 8.6e-24 115.5 322 29.2
Sed0028015 Sechium edule HOM05D001353 ORTHO05D002359 1.1e-23 115.2 349 30.4
CBR_g34531 Chara braunii HOM05D000019 ORTHO05D002359 1.5e-23 114.8 288 30.2
CAN.G60.8 Capsicum annuum HOM05D001353 ORTHO05D002359 1.9e-23 114.4 320 30.3
Os02g0281000 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D002359 1.9e-23 114.4 325 29.2
Pp3c25_7050 Physcomitrium patens HOM05D001353 ORTHO05D002359 5.6e-23 112.8 323 24.5
THA.LOC104804013 Tarenaya hassleriana HOM05D001353 ORTHO05D002359 7.2e-23 112.5 322 29.2
Medtr6g087000 Medicago truncatula HOM05D001353 ORTHO05D002359 1.2e-22 111.7 329 27.7
MELO3C024635.2 Cucumis melo HOM05D001353 ORTHO05D002359 1.6e-22 111.3 359 28.4
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.6e-22 111.3 347 28.0
HPP92_005273 Vanilla planifolia HOM05D001353 ORTHO05D002359 8.0e-22 109.0 332 27.7
Zm00001eb203570 Zea mays HOM05D001353 ORTHO05D002359 1.0e-21 108.6 324 28.7
MCO08G292 Micromonas commoda HOM05D000207 ORTHO05D017345 1.4e-21 108.2 263 32.3
PRCOL_00004149 Prasinoderma coloniale HOM05D000207 ORTHO05D002370 5.2e-21 106.3 248 31.9
Cre02.g076900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D017345 8.9e-21 105.5 277 27.8
MCO04G061 Micromonas commoda HOM05D001353 ORTHO05D013162 1.2e-20 105.1 235 31.9
Mapoly0029s0103 Marchantia polymorpha HOM05D000207 ORTHO05D017345 2.6e-20 104.0 232 30.2
CDE05G1729 Ceratophyllum demersum HOM05D001353 ORTHO05D002359 4.9e-19 99.8 271 29.5
AagrBONN_evm.TU.Sc2ySwM_344.2140 Anthoceros agrestis HOM05D000207 ORTHO05D017345 1.8e-18 97.8 241 29.5
Actinidia20405 Actinidia chinensis HOM05D001353 ORTHO05D002359 2.0e-17 94.4 286 29.0
CBR_g30159 Chara braunii HOM05D000019 ORTHO05D013162 3.5e-17 93.6 198 31.3
CiPaw.03G227500 Carya illinoinensis HOM05D001353 ORTHO05D002359 1.1e-15 88.6 141 38.3
SMO146G0147 Selaginella moellendorffii HOM05D001353 ORTHO05D013162 9.5e-15 85.5 233 29.2
CDE05G3143 Ceratophyllum demersum HOM05D001353 ORTHO05D002359 1.2e-14 85.1 167 35.3
MCO16G530 Micromonas commoda HOM05D000207 ORTHO05D269454 5.2e-13 79.7 212 30.7
CsaV3_6G021270 Cucumis sativus L. HOM05D001353 ORTHO05D002359 6.8e-13 79.3 184 32.1
MCO13G105 Micromonas commoda HOM05D012635 ORTHO05D016542 2.0e-09 67.8 155 27.7
MCO07G385 Micromonas commoda HOM05D001353 ORTHO05D013162 6.0e-09 66.2 114 36.0
PRCOL_00002602 Prasinoderma coloniale HOM05D012635 ORTHO05D016542 7.8e-09 65.9 162 29.0
Gorai.001G007600 Gossypium raimondii HOM05D001353 ORTHO05D002359 1.5e-07 61.6 147 27.9
Gohir.A07G004300 Gossypium hirsutum HOM05D001353 ORTHO05D002359 1.9e-07 61.2 147 27.9
Gohir.D07G007900 Gossypium hirsutum HOM05D001353 ORTHO05D002359 1.9e-07 61.2 147 27.9
MD15G1192800 Malus domestica HOM05D001353 ORTHO05D002359 4.3e-07 60.1 147 27.9
Ah.09g230830 Amaranthus hybridus HOM05D001353 ORTHO05D002359 7.3e-07 59.3 147 28.6
MD02G1058500 Malus domestica HOM05D001353 ORTHO05D002359 1.2e-06 58.5 147 27.9
Mapoly0129s0023 Marchantia polymorpha HOM05D001353 ORTHO05D013162 1.2e-06 58.5 51 49.0
MBI06_g17068_MAGBIO Magnolia biondii HOM05D000413 ORTHO05D000292 2.8e-06 57.4 114 28.1
PRCOL_00002454 Prasinoderma coloniale HOM05D002012 ORTHO05D001992 2.8e-06 57.4 287 26.1
Actinidia09438 Actinidia chinensis HOM05D001353 ORTHO05D002359 3.6e-06 57.0 147 28.6
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 8.1e-06 55.8 73 45.2
HPP92_007962 Vanilla planifolia HOM05D000413 ORTHO05D000292 8.1e-06 55.8 114 27.2


User provided reference genes

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