Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.3e-204 715.3 352 100.0
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 2.9e-42 176.8 353 34.3
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 4.2e-41 172.9 353 35.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.4e-39 167.9 353 35.7
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 8.8e-39 165.2 357 34.7
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 2.6e-38 163.7 361 33.5
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.7e-38 162.5 357 32.8
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 5.7e-38 162.5 365 33.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 7.5e-38 162.2 363 33.3
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 9.8e-38 161.8 357 33.9
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 9.8e-38 161.8 358 33.5
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.3e-37 161.4 358 34.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.3e-37 161.4 354 34.2
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.7e-37 161.0 357 33.9
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 2.8e-37 160.2 354 34.5
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 2.8e-37 160.2 357 34.7
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 2.8e-37 160.2 357 32.2
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 3.7e-37 159.8 354 33.1
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 4.9e-37 159.5 357 33.6
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 4.9e-37 159.5 354 32.2
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 8.3e-37 158.7 354 33.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 1.1e-36 158.3 353 34.0
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.1e-36 158.3 360 33.6
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.4e-36 157.9 357 33.3
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.8e-36 157.5 358 33.5
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.8e-36 157.5 360 33.6
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.8e-36 157.5 360 33.6
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.8e-36 157.5 357 33.3
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.8e-36 157.5 357 32.8
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.8e-36 157.5 354 33.3
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.8e-36 157.5 358 33.5
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.4e-36 157.1 360 33.6
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 2.4e-36 157.1 354 32.8
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 3.1e-36 156.8 327 34.9
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 3.1e-36 156.8 357 33.1
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 3.1e-36 156.8 354 33.6
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 4.1e-36 156.4 360 32.2
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 5.4e-36 156.0 358 32.7
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 5.4e-36 156.0 354 33.3
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 5.4e-36 156.0 357 33.6
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 7.0e-36 155.6 363 32.5
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 7.0e-36 155.6 357 32.8
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 9.2e-36 155.2 363 32.5
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 9.2e-36 155.2 358 33.2
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.6e-35 154.5 363 32.5
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 2.0e-35 154.1 327 35.2
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 2.0e-35 154.1 327 34.9
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 2.0e-35 154.1 363 31.7
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.0e-35 154.1 357 32.5
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 3.5e-35 153.3 354 33.6
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 3.5e-35 153.3 357 33.1
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 3.5e-35 153.3 358 32.7
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 4.5e-35 152.9 357 33.1
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 4.5e-35 152.9 357 33.3
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 4.5e-35 152.9 360 32.8
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 5.9e-35 152.5 370 31.6
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 7.7e-35 152.1 357 33.3
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 7.7e-35 152.1 357 32.8
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 7.7e-35 152.1 358 32.7
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 7.7e-35 152.1 360 33.1
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 7.7e-35 152.1 358 32.1
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.3e-34 151.4 357 31.7
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.3e-34 151.4 361 33.0
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 1.3e-34 151.4 357 32.8
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.3e-34 151.4 357 32.2
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.3e-34 151.4 319 34.8
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.7e-34 151.0 354 33.1
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 2.3e-34 150.6 363 32.0
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.3e-34 150.6 358 33.0
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.3e-34 150.6 327 34.3
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 2.9e-34 150.2 357 31.9
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.9e-34 150.2 327 34.3
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 3.8e-34 149.8 354 33.6
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 3.8e-34 149.8 357 32.5
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 3.8e-34 149.8 357 32.5
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 3.8e-34 149.8 324 34.0
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 5.0e-34 149.4 366 32.0
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 6.6e-34 149.1 327 34.3
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 6.6e-34 149.1 316 34.2
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 6.6e-34 149.1 358 32.4
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 6.6e-34 149.1 357 32.5
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 8.6e-34 148.7 327 34.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.1e-33 148.3 354 32.2
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.1e-33 148.3 354 32.2
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.1e-33 148.3 363 32.0
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.1e-33 148.3 327 34.3
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.5e-33 147.9 319 35.1
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.5e-33 147.9 360 33.1
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.5e-33 147.9 357 31.4
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.9e-33 147.5 327 33.6
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 2.5e-33 147.1 316 34.5
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 2.5e-33 147.1 357 32.2
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.5e-33 147.1 363 35.3
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 4.3e-33 146.4 357 32.8
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 4.3e-33 146.4 360 33.1
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 5.6e-33 146.0 357 32.2
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 1.6e-32 144.4 336 33.6
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.6e-32 144.4 327 33.0
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.1e-32 144.1 357 31.4
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 4.7e-32 142.9 340 32.4
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 4.7e-32 142.9 374 31.3
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 4.7e-32 142.9 357 31.7
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 1.0e-31 141.7 371 30.2
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.0e-31 141.7 362 30.9
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.4e-31 141.4 404 29.2
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 2.3e-31 140.6 370 31.4
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.0e-31 139.8 316 34.5
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 3.7e-29 133.3 256 35.2
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 9.2e-28 128.6 341 31.4
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.7e-26 124.4 326 31.6
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 3.0e-26 123.6 319 32.9
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.9e-25 120.9 386 27.7
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 6.2e-24 115.9 231 34.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.0e-23 115.2 350 29.4
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 2.3e-23 114.0 220 36.8
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.8e-23 112.5 274 29.2
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.4e-22 110.2 274 30.3
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 3.4e-22 110.2 258 32.9
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.9e-21 106.3 227 34.4
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 1.9e-20 104.4 220 34.1
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.9e-20 104.4 290 30.0
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 5.4e-20 102.8 244 31.6
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 9.2e-20 102.1 456 25.7
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 4.6e-19 99.8 183 35.5
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 4.6e-19 99.8 290 29.3
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 6.6e-18 95.9 183 36.1
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 2.8e-16 90.5 217 31.3
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.6e-14 84.0 274 29.6
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 4.1e-12 76.6 165 36.4
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 6.6e-10 69.3 123 39.8
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.1e-08 64.3 217 30.9
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 3.6e-08 63.5 186 26.9
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 3.1e-07 60.5 244 23.4


User provided reference genes

Program Settings