Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 3.0e-102 375.2 186 100.0
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.6e-47 192.2 177 63.3
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 7.7e-42 174.5 181 60.8
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 7.7e-34 147.9 157 52.2
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 3.6e-31 139.0 179 45.3
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 3.0e-30 136.0 164 50.0
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 8.8e-30 134.4 164 48.8
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 2.6e-29 132.9 185 45.4
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 2.6e-29 132.9 207 41.1
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.7e-28 129.0 193 40.9
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 4.8e-28 128.6 191 41.4
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 6.3e-28 128.3 190 41.6
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 6.3e-28 128.3 174 42.5
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.0e-25 120.9 190 40.0
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.3e-25 120.6 190 40.0
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 3.8e-25 119.0 190 40.5
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 1.1e-24 117.5 174 42.5
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 2.5e-24 116.3 191 41.4
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 9.5e-24 114.4 155 46.5
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 3.6e-23 112.5 142 46.5
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 6.1e-23 111.7 163 43.6
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 8.0e-23 111.3 175 42.9
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 8.9e-22 107.8 170 42.9
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.0e-21 106.7 152 41.4
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.7e-20 103.6 175 40.0
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 2.2e-20 103.2 153 37.9
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 3.7e-20 102.4 160 40.6
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 6.3e-20 101.7 178 37.6
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.4e-19 100.5 135 41.5
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 1.4e-19 100.5 157 38.2
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 4.1e-19 99.0 174 39.1
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 5.4e-19 98.6 148 42.6
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 9.2e-19 97.8 160 41.9
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 1.2e-18 97.4 160 41.2
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 1.2e-18 97.4 142 41.5
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 3.5e-18 95.9 180 40.6
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.5e-18 95.9 180 40.6
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 4.5e-18 95.5 138 44.2
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 7.8e-18 94.7 174 42.0
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.0e-17 94.4 141 42.6
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.3e-17 93.2 173 39.9
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 2.9e-17 92.8 199 32.2
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.0e-17 92.0 174 40.8
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 6.6e-17 91.7 192 32.8
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 6.6e-17 91.7 144 41.0
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.5e-16 90.5 141 44.0
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.9e-16 90.1 147 41.5
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.9e-16 90.1 174 35.1
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 5.6e-16 88.6 140 42.1
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 9.5e-16 87.8 175 33.1
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 1.2e-15 87.4 170 37.6
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.2e-15 87.4 170 37.6
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 1.2e-15 87.4 172 35.5
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.6e-15 87.0 144 41.0
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 6.1e-15 85.1 159 36.5
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 6.1e-15 85.1 167 36.5
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 8.0e-15 84.7 142 38.7
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 8.0e-15 84.7 161 36.6
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 2.3e-14 83.2 143 42.0
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.1e-14 82.8 158 34.2
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 8.9e-14 81.3 144 39.6
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 1.2e-13 80.9 168 32.1
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.6e-13 79.7 160 35.6
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.6e-13 79.7 160 35.6
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 3.4e-13 79.3 155 32.9
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 1.7e-12 77.0 44 70.5
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 2.2e-12 76.6 146 37.0
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 2.2e-12 76.6 146 37.0
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 3.7e-12 75.9 158 36.7
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 6.4e-12 75.1 149 32.9
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 8.3e-12 74.7 157 33.1
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 7.0e-11 71.6 145 35.9
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 1.7e-09 67.0 137 38.7
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 2.3e-09 66.6 146 32.9
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 3.0e-09 66.2 75 46.7
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 3.9e-09 65.9 148 34.5
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 3.9e-09 65.9 153 30.1
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 6.6e-09 65.1 148 33.8
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 1.5e-08 63.9 45 60.0
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.5e-08 63.9 133 34.6
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 1.9e-08 63.5 148 33.8
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 2.5e-08 63.2 40 67.5
A09p51320 Brassica napus HOM05D014107 ORTHO05D003056 7.3e-08 61.6 40 67.5
BraA09t40573Z Brassica rapa HOM05D014107 ORTHO05D003056 7.3e-08 61.6 40 67.5
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 3.6e-07 59.3 51 52.9
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 3.6e-07 59.3 51 52.9
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 3.6e-07 59.3 160 33.1
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 3.6e-07 59.3 46 52.2
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 4.7e-07 58.9 159 32.7
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 4.7e-07 58.9 36 63.9
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.4e-06 57.4 72 43.1
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.4e-06 57.4 72 43.1
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.4e-06 57.4 154 33.1
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 4.0e-06 55.8 40 60.0
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 4.0e-06 55.8 151 35.1
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 5.2e-06 55.5 118 31.4


User provided reference genes

Program Settings