Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 0.0e+00 2007.3 987 100.0
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 0.0e+00 1368.2 990 71.4
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 6.5e-305 1050.8 865 64.3
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 9.8e-237 824.3 997 49.1
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.5e-234 815.8 1008 49.2
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 3.0e-233 812.8 989 47.4
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 3.9e-225 785.8 992 47.2
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 6.4e-220 768.5 994 46.6
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 2.4e-219 766.5 991 46.0
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 3.0e-217 759.6 965 46.4
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 1.7e-212 743.8 989 45.7
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 2.1e-207 726.9 997 45.6
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 2.2e-204 716.8 995 43.4
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.9e-204 716.5 1005 45.3
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 4.3e-200 702.6 996 43.7
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 4.2e-195 686.0 988 43.3
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 5.5e-195 685.6 993 43.2
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.8e-193 680.6 993 42.9
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 2.1e-186 657.1 999 42.6
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.6e-183 647.5 997 42.6
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 8.2e-183 645.2 997 42.2
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.8e-182 644.0 999 42.2
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 4.1e-182 642.9 1032 41.1
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 4.5e-181 639.4 997 42.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 4.5e-173 612.8 994 41.1
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 2.0e-168 597.4 1003 40.6
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.1e-158 563.5 1000 39.1
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 7.2e-155 552.4 991 37.4
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.6e-154 551.2 873 40.8
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 4.4e-136 490.0 973 36.4
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 7.5e-136 489.2 998 34.6
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.1e-134 485.3 1001 36.1
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.4e-129 468.4 1025 34.3
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 1.7e-119 434.9 998 33.8
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.2e-110 404.1 938 33.4
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 4.1e-110 403.7 992 33.1
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.6e-109 401.7 1007 33.2
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 1.3e-108 398.7 1000 33.0
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 3.3e-107 394.0 798 36.5
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 3.8e-103 380.6 538 44.8
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 4.9e-103 380.2 945 33.3
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 3.5e-101 374.0 1004 32.6
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 2.3e-100 371.3 1010 31.5
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.5e-96 358.6 965 33.4
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 1.9e-94 351.7 963 32.7
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 3.2e-94 350.9 962 32.6
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 3.2e-94 350.9 1020 31.6
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 5.1e-92 343.6 1027 30.8
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.3e-90 339.0 998 29.4
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 3.6e-90 337.4 957 32.2
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 8.1e-90 336.3 957 32.6
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.1e-89 335.9 957 32.6
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 1.2e-88 332.4 1008 30.8
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 2.0e-88 331.6 1002 31.7
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 9.9e-88 329.3 1011 29.1
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 1.9e-86 325.1 965 31.5
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 5.4e-86 323.6 961 31.2
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 7.4e-83 313.2 993 29.6
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 1.4e-81 308.9 988 29.4
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 9.3e-78 296.2 859 31.8
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 2.3e-76 291.6 1000 30.0
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 6.7e-76 290.0 977 30.2
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 2.0e-72 278.5 968 30.2
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 2.9e-71 274.6 965 30.8
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 8.7e-68 263.1 991 27.3
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 4.5e-64 250.8 734 31.5
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.2e-61 242.7 987 26.7
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 3.6e-61 241.1 809 27.7
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 3.0e-60 238.0 1129 25.9
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 3.0e-60 238.0 736 30.8
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 6.7e-60 236.9 992 26.9
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 8.8e-60 236.5 997 27.3
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 2.0e-59 235.3 999 26.5
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.2e-55 221.9 1019 28.3
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.8e-55 221.1 1017 27.8
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 2.1e-53 215.3 972 26.6
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 1.2e-48 199.5 990 26.1
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 5.0e-47 194.1 976 26.3
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 2.5e-46 191.8 982 25.1
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 2.3e-44 185.3 981 25.1
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 3.1e-41 174.9 872 26.1
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.5e-38 166.0 702 27.2
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.8e-33 149.1 210 45.2
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 4.1e-33 147.9 1023 25.0
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 4.2e-30 137.9 288 38.2
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.7e-26 124.8 576 27.3
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.0e-20 105.1 102 55.9
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 8.9e-20 103.6 563 24.9
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 1.4e-17 96.3 517 24.0
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 3.5e-16 91.7 557 26.2
HPP92_005185 Vanilla planifolia HOM05D006994 ORTHO05D008229 6.6e-15 87.4 283 29.0
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 3.3e-14 85.1 164 38.4
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 2.1e-13 82.4 129 42.6
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 3.4e-11 75.1 149 39.6
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 3.2e-09 68.6 239 27.6
Os05g0518200 Oryza sativa ssp. japonica HOM05D052142 ORTHO05D050110 1.7e-07 62.8 295 26.1
Phvul.006G035050 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 7.3e-06 57.4 55 50.9


User provided reference genes

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