Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022515 Carpinus fangiana HOM05D004636 ORTHO05D005584 4.8e-191 671.0 337 100.0
Prupe.5G232000 Prunus persica HOM05D004636 ORTHO05D005584 1.1e-62 244.6 328 44.5
QL10p028203 Quercus lobata HOM05D004636 ORTHO05D005584 1.1e-62 244.6 326 44.2
QL10p028318 Quercus lobata HOM05D004636 ORTHO05D005584 1.1e-62 244.6 326 44.2
AagrBONN_evm.TU.Sc2ySwM_368.3263 Anthoceros agrestis HOM05D004636 ORTHO05D005584 1.9e-62 243.8 302 46.7
Lj4g0026502 Lotus japonicus HOM05D004636 ORTHO05D005584 9.3e-62 241.5 302 45.7
TPR.G1423 Trifolium pratense HOM05D004636 ORTHO05D005584 1.6e-61 240.7 302 44.0
RcHm_v2.0_Chr7g0178611 Rosa chinensis HOM05D004636 ORTHO05D005584 2.1e-61 240.4 302 47.0
GSVIVG01008416001 Vitis vinifera HOM05D004636 ORTHO05D005584 2.1e-61 240.4 328 43.9
ATR1102G012 Amborella trichopoda HOM05D004636 ORTHO05D005584 2.7e-61 240.0 302 45.4
Os03g0708400 Oryza sativa ssp. japonica HOM05D004636 ORTHO05D005584 2.7e-61 240.0 302 46.4
CSS0010888 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 3.5e-61 239.6 302 46.0
Psat7g002040 Pisum sativum HOM05D004636 ORTHO05D005584 3.5e-61 239.6 302 45.0
Nn4g24193 Nelumbo nucifera HOM05D004636 ORTHO05D005584 4.6e-61 239.2 302 46.4
Solyc06g068970.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 6.0e-61 238.8 302 46.4
Sopen06g026260 Solanum pennellii HOM05D004636 ORTHO05D005584 6.0e-61 238.8 302 46.4
MD06G1230700 Malus domestica HOM05D004636 ORTHO05D005584 1.3e-60 237.7 302 46.4
Nitab4.5_0003221g0040 Nicotiana tabacum HOM05D004636 ORTHO05D005584 1.8e-60 237.3 302 45.0
CSS0035576 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 2.3e-60 236.9 302 45.7
Migut.D01560 Erythranthe guttata HOM05D004636 ORTHO05D005584 3.0e-60 236.5 302 45.4
Cpa.g.sc3.409 Carica papaya HOM05D004636 ORTHO05D005584 3.9e-60 236.1 302 45.0
PSO478G0328 Papaver somniferum HOM05D004636 ORTHO05D005584 5.1e-60 235.7 302 45.4
Ca_17202_v3 Cicer arietinum L. HOM05D004636 ORTHO05D005584 6.7e-60 235.3 328 42.1
Nitab4.5_0007852g0030 Nicotiana tabacum HOM05D004636 ORTHO05D005584 6.7e-60 235.3 302 45.0
Atru.chr9.1749 Acer truncatum HOM05D004636 ORTHO05D005584 8.7e-60 235.0 328 43.0
Aa31LG7G2890 Aethionema arabicum HOM05D004636 ORTHO05D005584 8.7e-60 235.0 302 45.0
Thecc.03G053600 Theobroma cacao HOM05D004636 ORTHO05D005584 8.7e-60 235.0 302 45.7
TWI60G0943 Tripterygium wilfordii HOM05D004636 ORTHO05D005584 8.7e-60 235.0 302 45.7
Lalb_Chr16g0387091 Lupinus albus HOM05D004636 ORTHO05D005584 1.1e-59 234.6 302 44.7
MD14G1235300 Malus domestica HOM05D004636 ORTHO05D005584 1.1e-59 234.6 302 46.4
Zm00001eb216550 Zea mays HOM05D004636 ORTHO05D005584 1.1e-59 234.6 302 46.0
Actinidia39845 Actinidia chinensis HOM05D004636 ORTHO05D005584 1.5e-59 234.2 326 42.6
PSO017G6915 Papaver somniferum HOM05D004636 ORTHO05D005584 1.5e-59 234.2 302 45.0
CBR_g19480 Chara braunii HOM05D004636 ORTHO05D005584 3.3e-59 233.0 302 44.7
Glyma.08G053000 Glycine max HOM05D004636 ORTHO05D005584 3.3e-59 233.0 302 45.4
EL10Ac8g20412 Beta vulgaris HOM05D004636 ORTHO05D005584 4.3e-59 232.6 306 44.4
Manes.14G170300 Manihot esculenta HOM05D004636 ORTHO05D005584 4.3e-59 232.6 302 44.4
Phvul.002G329000 Phaseolus vulgaris HOM05D004636 ORTHO05D005584 4.3e-59 232.6 302 45.0
Sopen03g037780 Solanum pennellii HOM05D004636 ORTHO05D005584 4.3e-59 232.6 333 41.7
CAN.G1129.48 Capsicum annuum HOM05D004636 ORTHO05D005584 5.6e-59 232.3 337 41.2
FAN13G2936 Fragaria x ananassa HOM05D004636 ORTHO05D005584 5.6e-59 232.3 301 45.5
Aqoxy5G00264 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 7.4e-59 231.9 302 45.4
CsaV3_1G007090 Cucumis sativus L. HOM05D004636 ORTHO05D005584 7.4e-59 231.9 328 41.5
TAR371G0148 Trochodendron aralioides HOM05D004636 ORTHO05D005584 7.4e-59 231.9 302 44.7
BcaC05g25713 Brassica carinata HOM05D004636 ORTHO05D005584 9.6e-59 231.5 304 44.7
C05p16490 Brassica napus HOM05D004636 ORTHO05D005584 9.6e-59 231.5 304 44.4
BolC5t30346H Brassica oleracea HOM05D004636 ORTHO05D005584 9.6e-59 231.5 304 44.7
CiPaw.15G140800 Carya illinoinensis HOM05D004636 ORTHO05D005584 9.6e-59 231.5 302 44.4
BraA06t24552Z Brassica rapa HOM05D004636 ORTHO05D005584 1.3e-58 231.1 304 44.4
Lalb_Chr05g0221771 Lupinus albus HOM05D004636 ORTHO05D005584 1.3e-58 231.1 302 45.7
Mapoly0098s0041 Marchantia polymorpha HOM05D004636 ORTHO05D005584 1.3e-58 231.1 331 44.7
ECA246G4140 Erigeron canadensis HOM05D004636 ORTHO05D005584 1.6e-58 230.7 302 43.7
HanXRQChr17g0539331 Helianthus annuus HOM05D004636 ORTHO05D005584 1.6e-58 230.7 306 43.8
SalBow1G0702 Salvia bowleyana HOM05D004636 ORTHO05D005584 1.6e-58 230.7 302 44.7
PGSC0003DMG402028784 Solanum tuberosum HOM05D004636 ORTHO05D005584 1.6e-58 230.7 302 45.0
BcaB05g24805 Brassica carinata HOM05D004636 ORTHO05D005584 2.1e-58 230.3 302 44.7
Lsat_1_v5_gn_3_28120 Lactuca sativa HOM05D004636 ORTHO05D005584 2.1e-58 230.3 302 44.0
A06p14210 Brassica napus HOM05D004636 ORTHO05D005584 2.8e-58 229.9 304 44.1
FAN08G1718 Fragaria x ananassa HOM05D004636 ORTHO05D005584 2.8e-58 229.9 301 45.2
Carub.0002s2039 Capsella rubella HOM05D004636 ORTHO05D005584 3.7e-58 229.6 302 44.4
Haze_18812 Corylus avellana HOM05D004636 ORTHO05D005584 3.7e-58 229.6 302 45.0
Sc04g0004880 Simmondsia chinensis HOM05D004636 ORTHO05D005584 3.7e-58 229.6 302 45.4
Solyc03g118830.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 4.8e-58 229.2 333 41.4
AL2G33430 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 6.2e-58 228.8 315 42.5
AT1G73650 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 6.2e-58 228.8 302 43.7
Duzib205G0159 Durio zibethinus HOM05D004636 ORTHO05D005584 6.2e-58 228.8 302 43.7
Sp1g16160 Schrenkiella parvula HOM05D004636 ORTHO05D005584 6.2e-58 228.8 304 44.4
Cc04_g06400 Coffea canephora HOM05D004636 ORTHO05D005584 8.1e-58 228.4 302 43.0
Sed0027092 Sechium edule HOM05D004636 ORTHO05D005584 1.1e-57 228.0 328 42.1
AT1G18180 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 1.4e-57 227.6 304 43.4
C02p31240 Brassica napus HOM05D004636 ORTHO05D005584 1.4e-57 227.6 304 44.7
Nitab4.5_0006894g0020 Nicotiana tabacum HOM05D004636 ORTHO05D005584 1.4e-57 227.6 301 43.9
CARHR018750 Cardamine hirsuta HOM05D004636 ORTHO05D005584 1.8e-57 227.3 302 43.7
SEGI_28538 Sequoiadendron giganteum HOM05D004636 ORTHO05D005584 1.8e-57 227.3 305 43.3
Potri.015G039900 Populus trichocarpa HOM05D004636 ORTHO05D005584 2.4e-57 226.9 306 45.1
PGR083G1819 Punica granatum HOM05D004636 ORTHO05D005584 2.4e-57 226.9 302 43.7
CAN.G423.25 Capsicum annuum HOM05D004636 ORTHO05D005584 3.1e-57 226.5 302 44.0
MELO3C002127.2 Cucumis melo HOM05D004636 ORTHO05D005584 3.1e-57 226.5 302 42.7
Gohir.A03G093400 Gossypium hirsutum HOM05D004636 ORTHO05D005584 3.1e-57 226.5 302 43.7
Pp3c13_4300 Physcomitrium patens HOM05D004636 ORTHO05D005584 3.1e-57 226.5 302 42.4
Sp5g28820 Schrenkiella parvula HOM05D004636 ORTHO05D005584 3.1e-57 226.5 302 43.4
unitig_0.g807 Utricularia gibba HOM05D004636 ORTHO05D005584 3.1e-57 226.5 332 41.3
Thhalv10018948m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 5.3e-57 225.7 302 44.0
Gorai.005G131600 Gossypium raimondii HOM05D004636 ORTHO05D005584 5.3e-57 225.7 302 43.4
Mapoly0088s0079 Marchantia polymorpha HOM05D004636 ORTHO05D005584 5.3e-57 225.7 299 44.8
BcaC08g46785 Brassica carinata HOM05D004636 ORTHO05D005584 6.9e-57 225.3 311 42.4
BraA02t06927Z Brassica rapa HOM05D004636 ORTHO05D005584 6.9e-57 225.3 306 43.5
Gohir.D02G122500 Gossypium hirsutum HOM05D004636 ORTHO05D005584 6.9e-57 225.3 329 41.0
Ciclev10009007m.g Citrus clementina HOM05D004636 ORTHO05D005584 9.0e-57 224.9 328 41.2
Nitab4.5_0001456g0100 Nicotiana tabacum HOM05D004636 ORTHO05D005584 1.2e-56 224.6 301 43.2
PGSC0003DMG401005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 1.5e-56 224.2 300 43.7
BcaC03g15444 Brassica carinata HOM05D002296 ORTHO05D005584 2.6e-56 223.4 306 43.5
BolC2t09166H Brassica oleracea HOM05D004636 ORTHO05D005584 2.6e-56 223.4 306 43.5
HPP92_004161 Vanilla planifolia HOM05D004636 ORTHO05D005584 2.6e-56 223.4 302 43.0
A02p18820 Brassica napus HOM05D004636 ORTHO05D005584 5.8e-56 222.2 306 42.8
Medtr8g107030 Medicago truncatula HOM05D004636 ORTHO05D005584 5.8e-56 222.2 333 40.5
Carub.0001s1782 Capsella rubella HOM05D004636 ORTHO05D005584 7.6e-56 221.9 304 42.4
ClCG04G010690 Citrullus lanatus HOM05D004636 ORTHO05D005584 1.0e-55 221.5 328 40.2
THA.LOC104813922 Tarenaya hassleriana HOM05D004636 ORTHO05D005584 1.0e-55 221.5 302 43.4
BraA07t31501Z Brassica rapa HOM05D004636 ORTHO05D005584 1.3e-55 221.1 311 41.5
Rhsim08G0076500 Rhododendron simsii HOM05D004636 ORTHO05D005584 1.3e-55 221.1 328 40.2
Aa31LG4G3950 Aethionema arabicum HOM05D004636 ORTHO05D005584 1.7e-55 220.7 304 43.1
BolC6t39815H Brassica oleracea HOM05D004636 ORTHO05D005584 3.8e-55 219.5 311 42.1
CARHR066710 Cardamine hirsuta HOM05D004636 ORTHO05D005584 4.9e-55 219.2 302 41.7
Peaxi162Scf00683g00341 Petunia axillaris HOM05D004636 ORTHO05D005584 2.5e-54 216.9 316 42.1
BcaB03g15070 Brassica carinata HOM05D004636 ORTHO05D005584 5.5e-54 215.7 307 42.7
Sabra15G0057200 Salix brachista HOM05D004636 ORTHO05D005584 5.5e-54 215.7 333 42.3
Aqoxy3G00107 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 1.2e-53 214.5 306 42.8
CDE06G1767 Ceratophyllum demersum HOM05D004636 ORTHO05D005584 2.7e-53 213.4 284 43.3
SGA_v2.0_scaffold191G40443 Striga asiatica HOM05D004636 ORTHO05D005584 2.7e-53 213.4 355 39.7
Duzib068G0268 Durio zibethinus HOM05D004636 ORTHO05D005584 6.0e-53 212.2 302 40.7
AL1G30550 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 1.8e-52 210.7 305 42.3
C06p47770 Brassica napus HOM05D000239 ORTHO05D000484 2.3e-52 210.3 297 42.1
Glyma.05G245000 Glycine max HOM05D004636 ORTHO05D005584 3.9e-52 209.5 284 44.4
Pp3c10_10850 Physcomitrium patens HOM05D004636 ORTHO05D005584 1.5e-51 207.6 306 40.8
Gorai.007G004200 Gossypium raimondii HOM05D004636 ORTHO05D005584 1.9e-51 207.2 300 40.3
Gohir.D11G003200 Gossypium hirsutum HOM05D004636 ORTHO05D005584 3.3e-51 206.5 300 40.3
Mapoly0024s0109 Marchantia polymorpha HOM05D004636 ORTHO05D005584 5.7e-51 205.7 306 38.9
Gohir.A11G003700 Gossypium hirsutum HOM05D004636 ORTHO05D005584 1.6e-50 204.1 300 40.0
A07p39520 Brassica napus HOM05D004636 ORTHO05D005584 5.3e-49 199.1 249 44.2
Pp3c14_25340 Physcomitrium patens HOM05D004636 ORTHO05D005584 9.0e-49 198.4 302 39.7
arahy.Tifrunner.gnm1.ann1.N5TGRV Arachis hypogaea HOM05D004636 ORTHO05D005584 1.7e-47 194.1 337 37.7
Peaxi162Scf00207g00030 Petunia axillaris HOM05D004636 ORTHO05D005584 6.5e-47 192.2 321 38.3
Lj5C156T13 Lonicera japonica HOM05D004636 ORTHO05D005584 1.2e-45 188.0 302 38.7
Manes.06G007800 Manihot esculenta HOM05D004636 ORTHO05D005584 2.1e-45 187.2 306 38.9
arahy.Tifrunner.gnm1.ann1.1QZS5S Arachis hypogaea HOM05D004636 ORTHO05D005584 2.7e-45 186.8 331 36.9
AUR62017039 Chenopodium quinoa HOM05D004636 ORTHO05D005584 2.7e-45 186.8 302 40.7
unitig_60.g25784 Utricularia gibba HOM05D004636 ORTHO05D005584 2.7e-45 186.8 303 40.9
vmacro18131 Vaccinium macrocarpon HOM05D004636 ORTHO05D005584 6.1e-45 185.7 318 37.4
DCAR_010202 Daucus carota HOM05D004636 ORTHO05D005584 1.9e-43 180.6 264 40.5
Dinv18254 Davidia involucrata HOM05D004636 ORTHO05D005584 1.8e-41 174.1 218 43.1
Lj5C156T2 Lonicera japonica HOM05D004636 ORTHO05D005584 6.9e-41 172.2 305 38.0
Haze_18815 Corylus avellana HOM05D004636 ORTHO05D005584 7.7e-40 168.7 235 43.0
PGSC0003DMG402005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 3.2e-38 163.3 208 42.8
Haze_18816 Corylus avellana HOM05D004636 ORTHO05D005584 1.6e-37 161.0 313 38.0
Thhalv10008683m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 3.9e-36 156.4 221 42.1
Ah.14g089580 Amaranthus hybridus HOM05D004636 ORTHO05D005584 2.0e-35 154.1 302 35.8
Oeu046173.1 Olea europaea HOM05D004636 ORTHO05D005584 8.2e-34 148.7 217 41.0
Oeu046174.1 Olea europaea HOM05D004636 ORTHO05D005584 8.2e-34 148.7 217 41.0
Lsat_1_v5_gn_4_113781 Lactuca sativa HOM05D004636 ORTHO05D005584 1.4e-33 147.9 200 40.5
Cre09.g401701 Chlamydomonas reinhardtii HOM05D004636 ORTHO05D005584 1.4e-28 131.3 259 33.6
MCO11G174 Micromonas commoda HOM05D004636 ORTHO05D005584 1.4e-28 131.3 267 34.1
CBR_g30737 Chara braunii HOM05D004636 ORTHO05D005584 2.3e-28 130.6 251 33.9
ATR1102G014 Amborella trichopoda HOM05D004636 ORTHO05D005584 3.9e-28 129.8 181 42.5
AUR62044488 Chenopodium quinoa HOM05D004636 ORTHO05D005584 3.9e-28 129.8 190 40.5
Haze_18821 Corylus avellana HOM05D004636 ORTHO05D005584 2.0e-24 117.5 179 41.3
COL.COLO4_16136 Corchorus olitorius HOM05D004636 ORTHO05D005584 6.5e-23 112.5 197 35.5
AUR62014842 Chenopodium quinoa HOM05D004636 ORTHO05D005584 7.2e-22 109.0 188 36.2
Sed0020868 Sechium edule HOM05D004636 ORTHO05D005584 1.2e-21 108.2 152 42.8
PRCOL_00001152 Prasinoderma coloniale HOM05D004636 ORTHO05D005584 1.6e-21 107.8 280 29.6
Hund23775 Selenicereus undatus HOM05D004636 ORTHO05D005584 1.2e-13 81.6 90 43.3
Cfa026861 Carpinus fangiana HOM05D004636 ORTHO05D005584 2.6e-11 73.9 179 30.7
HPP92_011083 Vanilla planifolia HOM05D004636 ORTHO05D005584 3.4e-11 73.6 87 40.2
RcHm_v2.0_Chr1g0361831 Rosa chinensis HOM05D004720 ORTHO05D005359 3.8e-07 60.1 230 25.7
FvH4_7g18190 Fragaria vesca HOM05D004720 ORTHO05D005359 5.0e-07 59.7 230 25.7
FAN10G2406 Fragaria x ananassa HOM05D004720 ORTHO05D005359 6.5e-07 59.3 230 24.8
FAN03G3442 Fragaria x ananassa HOM05D004720 ORTHO05D005359 8.5e-07 58.9 230 25.7
Nn2g11442 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.5e-07 58.9 90 35.6
PGR142G1554 Punica granatum HOM05D004720 ORTHO05D005359 8.5e-07 58.9 230 25.7
DCAR_010453 Daucus carota HOM05D004720 ORTHO05D005359 1.1e-06 58.5 253 24.5
FAN10G3292 Fragaria x ananassa HOM05D004720 ORTHO05D005359 1.9e-06 57.8 232 24.6
Carub.0004s2961 Capsella rubella HOM05D004720 ORTHO05D005359 2.5e-06 57.4 230 23.5
FAN06G1212 Fragaria x ananassa HOM05D004720 ORTHO05D005359 2.5e-06 57.4 230 25.7
Prupe.2G203800 Prunus persica HOM05D004720 ORTHO05D005359 2.5e-06 57.4 230 26.5
FAN01G0651 Fragaria x ananassa HOM05D004720 ORTHO05D005359 3.2e-06 57.0 230 25.2
THA.LOC104817408 Tarenaya hassleriana HOM05D004720 ORTHO05D005359 4.2e-06 56.6 244 25.8
HanXRQChr04g0118361 Helianthus annuus HOM05D004720 ORTHO05D005359 5.5e-06 56.2 231 28.1
CARHR142240 Cardamine hirsuta HOM05D004720 ORTHO05D005359 7.2e-06 55.8 230 23.5
SMO331G0060 Selaginella moellendorffii HOM05D004720 ORTHO05D005359 9.5e-06 55.5 255 24.7


User provided reference genes

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