Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 3.6e-202 708.0 347 100.0
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 3.0e-47 193.4 306 36.9
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 5.6e-46 189.1 316 36.4
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 2.8e-45 186.8 309 35.6
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 2.4e-44 183.7 320 35.6
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 4.0e-44 183.0 306 35.9
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 9.0e-44 181.8 320 34.1
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 2.0e-43 180.6 307 35.2
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 3.4e-43 179.9 312 37.2
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 4.5e-43 179.5 308 35.4
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 1.0e-42 178.3 304 36.2
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.0e-42 178.3 321 35.8
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 1.3e-42 177.9 313 35.1
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 1.7e-42 177.6 311 36.0
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 2.2e-42 177.2 301 36.2
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 2.2e-42 177.2 298 36.6
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.2e-42 177.2 309 33.7
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 2.2e-42 177.2 317 36.3
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.9e-42 176.8 306 35.3
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 2.9e-42 176.8 306 35.3
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 2.9e-42 176.8 302 34.8
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 3.8e-42 176.4 313 35.5
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 3.8e-42 176.4 313 35.5
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 6.5e-42 175.6 313 36.1
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 6.5e-42 175.6 330 32.1
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 6.5e-42 175.6 306 35.0
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 8.4e-42 175.3 304 36.2
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 8.4e-42 175.3 304 36.2
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 8.4e-42 175.3 316 34.2
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 1.1e-41 174.9 335 33.1
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.4e-41 174.5 302 36.8
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 1.4e-41 174.5 311 36.0
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 1.9e-41 174.1 303 36.3
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 1.9e-41 174.1 304 37.2
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.5e-41 173.7 310 35.5
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 2.5e-41 173.7 299 35.5
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 3.2e-41 173.3 312 33.7
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 4.2e-41 172.9 310 33.9
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 4.2e-41 172.9 311 33.4
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 4.2e-41 172.9 313 35.8
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 4.2e-41 172.9 312 34.6
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 5.5e-41 172.6 328 35.1
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 5.5e-41 172.6 305 35.1
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 7.1e-41 172.2 307 35.5
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 9.3e-41 171.8 332 35.5
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 1.6e-40 171.0 309 34.6
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.6e-40 171.0 317 33.8
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 4.6e-40 169.5 306 35.0
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 7.9e-40 168.7 312 32.4
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 1.8e-39 167.5 303 35.3
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 1.8e-39 167.5 304 35.5
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 2.3e-39 167.2 310 33.2
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 3.0e-39 166.8 302 35.4
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 3.0e-39 166.8 319 34.2
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 3.0e-39 166.8 326 34.4
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.9e-39 166.4 320 34.1
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 3.9e-39 166.4 307 33.9
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 5.1e-39 166.0 304 34.5
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 5.1e-39 166.0 311 34.7
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 5.1e-39 166.0 311 34.4
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 6.7e-39 165.6 312 33.0
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 8.7e-39 165.2 307 32.9
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 1.1e-38 164.9 304 33.9
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 1.1e-38 164.9 299 34.8
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 1.1e-38 164.9 306 33.7
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.9e-38 164.1 304 35.5
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 2.5e-38 163.7 303 33.7
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 4.3e-38 162.9 300 35.0
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 5.7e-38 162.5 303 35.0
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.3e-37 161.4 307 33.9
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 1.3e-37 161.4 325 32.9
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 1.6e-37 161.0 327 32.4
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.6e-37 161.0 298 34.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.6e-37 161.0 310 34.2
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 2.1e-37 160.6 306 33.7
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 3.7e-37 159.8 342 32.5
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.4e-36 157.9 276 34.1
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 4.1e-36 156.4 313 32.9
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 9.0e-36 155.2 311 33.1
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 2.0e-35 154.1 309 35.3
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 2.6e-35 153.7 352 32.4
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 2.6e-35 153.7 270 35.9
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 3.4e-35 153.3 308 33.8
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 3.4e-35 153.3 308 33.8
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 2.2e-34 150.6 366 30.3
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 2.2e-34 150.6 366 30.3
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.1e-32 144.1 299 32.4
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 2.7e-32 143.7 309 33.3
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 9.7e-30 135.2 272 32.0
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.6e-29 134.4 205 38.0
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 6.3e-29 132.5 214 35.5
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 6.3e-29 132.5 239 35.1
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 8.2e-29 132.1 287 31.7
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.0e-27 127.5 214 36.0
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 2.6e-27 127.1 215 34.9
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 1.4e-25 121.3 298 32.9
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 6.7e-23 112.5 238 31.1
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 7.7e-19 99.0 287 27.5
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 2.5e-17 94.0 200 33.0
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 2.7e-16 90.5 87 49.4
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 3.3e-14 83.6 148 33.8
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.8e-12 77.8 186 30.6
Carub.0006s1818 Capsella rubella HOM05D004978 ORTHO05D005621 1.7e-10 71.2 296 25.7
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 3.2e-09 67.0 282 25.2
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 5.5e-09 66.2 296 24.3
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 5.5e-09 66.2 316 23.4
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 7.2e-09 65.9 334 22.8
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 9.4e-09 65.5 306 23.5
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 9.4e-09 65.5 304 26.3
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 1.2e-08 65.1 316 23.4
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 1.2e-08 65.1 330 22.1
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.2e-08 65.1 273 24.9
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 1.6e-08 64.7 306 23.5
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 2.1e-08 64.3 316 23.4
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 3.6e-08 63.5 306 23.9
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 3.6e-08 63.5 285 26.3
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 4.7e-08 63.2 292 26.7
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 8.0e-08 62.4 318 24.2
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 1.0e-07 62.0 306 23.2
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 1.0e-07 62.0 306 23.2
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 1.0e-07 62.0 306 23.2
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 1.4e-07 61.6 279 24.7
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 1.4e-07 61.6 318 24.5
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.4e-07 61.6 337 22.6
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 1.4e-07 61.6 192 29.2
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 2.3e-07 60.8 305 24.3
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 4.0e-07 60.1 281 25.3
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 5.2e-07 59.7 322 21.4
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 6.7e-07 59.3 310 23.5
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 6.7e-07 59.3 274 25.5
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 8.8e-07 58.9 303 24.4
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 8.8e-07 58.9 272 25.4
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 1.1e-06 58.5 306 22.2
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 1.1e-06 58.5 273 24.9
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 1.5e-06 58.2 296 25.0
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.5e-06 58.2 40 57.5
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 2.0e-06 57.8 176 26.7
Cre09.g407110 Chlamydomonas reinhardtii HOM05D004978 ORTHO05D005621 3.3e-06 57.0 154 26.6
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 4.4e-06 56.6 200 27.5
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 4.4e-06 56.6 39 59.0
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 5.7e-06 56.2 283 23.0
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 7.5e-06 55.8 177 26.6
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 7.5e-06 55.8 317 23.0
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 7.5e-06 55.8 42 50.0
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 9.7e-06 55.5 274 23.0
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 9.7e-06 55.5 264 22.7
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 9.7e-06 55.5 305 22.6


User provided reference genes

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