Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.2e-158 563.1 297 100.0
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 1.9e-66 256.9 295 45.1
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 8.8e-56 221.5 278 44.2
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.2e-54 216.9 267 44.2
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 8.2e-54 214.9 268 43.7
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 5.3e-53 212.2 267 42.3
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 5.3e-53 212.2 272 42.3
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 1.5e-52 210.7 266 42.9
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 2.0e-52 210.3 279 45.5
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 2.6e-52 209.9 272 42.3
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 3.5e-52 209.5 272 41.9
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 3.5e-52 209.5 273 42.1
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 7.7e-52 208.4 272 42.3
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 7.7e-52 208.4 272 42.3
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.0e-51 208.0 271 42.8
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.0e-51 208.0 271 42.8
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 1.0e-51 208.0 275 41.5
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 1.0e-51 208.0 275 40.7
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.0e-51 208.0 274 40.9
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 1.7e-51 207.2 274 41.6
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 2.2e-51 206.8 267 42.7
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 2.2e-51 206.8 267 42.7
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.9e-51 206.5 268 42.9
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 3.8e-51 206.1 272 41.9
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 3.8e-51 206.1 274 41.2
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 3.8e-51 206.1 274 41.6
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 3.8e-51 206.1 267 42.3
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.8e-51 206.1 272 41.5
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 3.8e-51 206.1 267 42.7
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 3.8e-51 206.1 272 41.2
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 5.0e-51 205.7 273 41.0
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 5.0e-51 205.7 273 41.4
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.0e-51 205.7 267 41.9
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 6.5e-51 205.3 275 42.5
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 6.5e-51 205.3 274 41.2
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.1e-50 204.5 267 41.9
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 1.4e-50 204.1 269 42.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 1.4e-50 204.1 272 41.5
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.9e-50 203.8 272 41.9
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 1.9e-50 203.8 272 41.9
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 1.9e-50 203.8 267 41.9
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.9e-50 203.8 267 41.9
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.9e-50 203.8 267 41.9
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 2.5e-50 203.4 274 41.6
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 3.2e-50 203.0 274 41.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 4.2e-50 202.6 264 42.0
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 4.2e-50 202.6 267 41.9
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 5.5e-50 202.2 271 40.6
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 7.2e-50 201.8 273 42.1
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 9.4e-50 201.4 274 42.7
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 9.4e-50 201.4 272 40.8
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 1.2e-49 201.1 273 41.4
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.6e-49 200.7 274 41.2
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 1.6e-49 200.7 272 40.8
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.6e-49 200.7 267 41.2
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 1.6e-49 200.7 267 41.2
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 1.6e-49 200.7 274 40.9
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.1e-49 200.3 274 40.5
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.7e-49 199.9 273 39.6
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.7e-49 199.9 274 39.8
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 6.1e-49 198.7 275 41.1
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 6.1e-49 198.7 272 40.4
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 6.1e-49 198.7 272 41.2
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 6.1e-49 198.7 272 41.9
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.0e-49 198.4 273 41.0
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.3e-48 196.8 274 40.5
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 2.3e-48 196.8 274 41.2
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 2.3e-48 196.8 272 40.4
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 2.3e-48 196.8 272 40.4
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.9e-48 196.1 272 41.5
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 3.9e-48 196.1 274 40.1
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 5.2e-48 195.7 274 40.1
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 6.7e-48 195.3 267 40.4
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.1e-47 194.5 267 41.2
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.1e-47 194.5 268 40.3
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 2.6e-47 193.4 289 41.5
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.3e-47 193.0 268 41.0
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.3e-47 193.0 268 41.0
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 4.4e-47 192.6 267 39.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 5.7e-47 192.2 280 40.0
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.3e-46 191.0 271 39.1
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.3e-46 191.0 271 39.1
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.3e-46 191.0 271 39.1
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.7e-46 190.7 267 39.0
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 1.7e-46 190.7 267 38.6
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 2.8e-46 189.9 274 40.5
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.7e-46 189.5 287 38.7
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 4.8e-46 189.1 267 38.6
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 4.8e-46 189.1 267 38.6
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 4.8e-46 189.1 267 38.6
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 4.8e-46 189.1 267 38.6
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 4.8e-46 189.1 267 38.6
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 4.8e-46 189.1 287 38.3
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 6.3e-46 188.7 267 39.0
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 8.2e-46 188.3 267 38.2
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 2.4e-45 186.8 267 38.2
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 4.1e-45 186.0 267 40.4
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.1e-45 186.0 267 37.8
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.1e-45 186.0 267 37.8
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 3.5e-44 183.0 255 40.0
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 1.3e-43 181.0 254 40.2
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.7e-43 180.6 272 39.0
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 9.4e-42 174.9 317 34.4
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.8e-40 170.6 291 37.1
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 1.8e-40 170.6 223 41.7
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 8.8e-40 168.3 220 43.2
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 2.6e-39 166.8 266 36.8
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 9.7e-39 164.9 220 40.5
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 1.7e-38 164.1 223 42.2
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 7.0e-37 158.7 271 36.5
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.7e-35 154.1 231 39.0
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 9.8e-31 138.3 179 40.2
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.3e-30 137.9 274 32.8
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 3.7e-30 136.3 132 50.0
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.1e-25 120.6 114 50.0
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 3.0e-24 116.7 106 51.9
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 2.2e-22 110.5 106 50.0
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 8.3e-22 108.6 106 48.1
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 2.4e-21 107.1 178 34.8
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 7.0e-21 105.5 106 47.2
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 9.5e-18 95.1 85 50.6
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.2e-17 94.7 85 48.2
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.6e-17 93.2 71 56.3
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 4.0e-16 89.7 160 33.1
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.7e-14 84.3 105 41.0
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 1.6e-12 77.8 220 28.2
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 6.0e-12 75.9 151 33.1
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 7.3e-10 68.9 66 48.5
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.2e-09 68.2 86 41.9
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 6.2e-09 65.9 85 41.2
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 5.2e-08 62.8 84 40.5
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.9e-06 57.0 57 50.9


User provided reference genes

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