Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 9.8e-228 793.1 397 100.0
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.7e-86 322.8 355 51.8
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.4e-85 320.9 355 50.4
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.9e-85 320.5 355 51.5
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 2.4e-85 320.1 355 51.5
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 7.1e-85 318.5 355 51.3
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.6e-84 317.4 355 51.0
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.6e-84 317.4 355 51.0
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.6e-84 317.4 355 51.0
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-84 317.0 355 51.0
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.7e-84 316.6 355 51.5
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.7e-84 316.6 355 51.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.5e-84 316.2 355 50.7
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.5e-84 316.2 355 51.3
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.5e-84 316.2 355 51.3
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.6e-84 315.8 355 51.8
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 4.6e-84 315.8 355 51.0
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 6.0e-84 315.5 355 50.4
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.0e-84 315.5 355 51.5
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 6.0e-84 315.5 355 51.3
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.8e-84 315.1 355 50.4
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.7e-83 313.9 355 51.0
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-83 313.9 355 50.7
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.7e-83 313.9 355 50.4
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.7e-83 313.9 355 50.4
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.7e-83 313.9 355 50.4
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.0e-83 313.2 355 50.7
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 3.9e-83 312.8 354 50.3
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 6.6e-83 312.0 355 50.4
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.1e-82 311.2 355 50.1
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-82 311.2 355 50.7
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-82 311.2 355 50.7
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.1e-82 311.2 355 50.4
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.9e-82 310.5 355 50.1
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.9e-82 310.5 355 50.1
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.5e-82 310.1 387 47.3
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 2.5e-82 310.1 355 50.1
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 3.3e-82 309.7 355 49.9
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 3.3e-82 309.7 355 49.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 4.3e-82 309.3 355 49.9
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.3e-82 309.3 356 50.8
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 4.3e-82 309.3 355 49.6
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 4.3e-82 309.3 355 50.1
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 5.6e-82 308.9 353 49.3
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 5.6e-82 308.9 355 49.0
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 7.3e-82 308.5 355 49.3
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 7.3e-82 308.5 355 50.1
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.3e-82 308.5 355 50.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.3e-82 308.5 355 50.1
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 7.3e-82 308.5 355 50.4
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 9.5e-82 308.1 355 50.1
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 9.5e-82 308.1 355 49.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.2e-81 307.8 355 49.0
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.2e-81 307.8 355 49.0
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.2e-81 307.8 352 50.3
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.2e-81 307.8 355 49.9
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.6e-81 307.4 355 49.3
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 2.1e-81 307.0 352 49.1
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.1e-81 307.0 355 49.0
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.1e-81 307.0 356 49.7
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.8e-81 306.6 355 49.9
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 3.6e-81 306.2 355 49.6
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.6e-81 306.2 361 49.0
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 3.6e-81 306.2 353 49.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 3.6e-81 306.2 355 49.6
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 3.6e-81 306.2 355 49.6
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 6.2e-81 305.4 355 49.9
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.2e-81 305.4 355 49.9
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.2e-81 305.4 355 49.9
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 6.2e-81 305.4 355 49.6
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 6.2e-81 305.4 355 49.6
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.1e-80 304.7 355 49.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.1e-80 304.7 355 49.0
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-80 304.3 390 47.7
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.4e-80 304.3 355 50.1
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.4e-80 304.3 355 48.5
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.8e-80 303.9 355 49.0
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.8e-80 303.9 355 49.6
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.8e-80 303.9 355 49.6
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 3.1e-80 303.1 358 50.3
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 4.0e-80 302.8 355 48.5
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 5.2e-80 302.4 355 49.0
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.2e-80 302.4 355 49.0
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.8e-80 302.0 355 49.3
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.8e-80 302.0 355 48.5
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 8.9e-80 301.6 360 48.9
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 8.9e-80 301.6 359 49.0
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.3
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.3
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.3
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.3
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.3
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.3
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.0
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.2e-79 301.2 357 49.6
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.2e-79 301.2 355 49.6
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.5e-79 300.8 355 49.0
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.5e-79 300.8 355 49.3
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.5e-79 300.8 378 47.9
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.5e-79 300.8 355 49.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.5e-79 300.8 390 46.9
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.5e-79 300.8 390 47.2
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.0e-79 300.4 355 49.0
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.0e-79 300.4 355 49.3
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 2.0e-79 300.4 355 48.7
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 2.6e-79 300.1 355 48.2
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-79 299.7 355 48.7
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 3.4e-79 299.7 357 48.2
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.4e-79 299.3 355 48.5
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.4e-79 299.3 355 47.9
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.4e-79 299.3 355 48.7
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.8e-79 298.9 355 48.5
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 5.8e-79 298.9 357 48.2
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 7.6e-79 298.5 355 49.0
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 9.9e-79 298.1 355 48.5
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.3e-78 297.7 359 48.2
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.7e-78 297.4 350 49.7
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.7e-78 297.4 355 48.7
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.7e-78 297.4 355 48.2
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.2e-78 297.0 355 48.7
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.9e-78 296.6 383 47.3
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 2.9e-78 296.6 357 49.0
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 6.4e-78 295.4 355 47.9
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.9e-77 293.9 357 49.0
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-77 293.9 380 47.1
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.4e-77 293.5 346 49.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.2e-76 291.2 351 49.6
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 4.6e-76 289.3 357 47.9
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.7e-75 287.3 355 48.5
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.0e-75 286.6 355 47.3
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.9e-75 286.2 355 47.3
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 3.9e-75 286.2 350 47.4
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 8.6e-75 285.0 352 46.6
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.9e-74 283.9 355 45.4
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 3.3e-74 283.1 404 43.1
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.3e-74 282.7 355 46.8
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.6e-74 281.6 370 47.8
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 3.6e-73 279.6 332 48.8
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.4e-72 276.9 355 47.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 2.4e-72 276.9 434 40.8
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.4e-71 272.7 360 45.8
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 9.9e-71 271.6 332 47.0
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.3e-70 271.2 304 52.0
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.9e-69 267.3 470 38.7
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.9e-66 257.3 303 50.2
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 9.6e-66 255.0 317 47.3
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.3e-59 234.6 355 41.1
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.1e-58 231.5 304 44.7
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 5.8e-55 219.2 267 47.6
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 8.4e-54 215.3 239 51.5
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 4.2e-53 213.0 237 53.2
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.6e-52 211.1 237 51.1
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 9.6e-50 201.8 355 37.2
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.6e-44 184.5 361 36.8
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 4.6e-44 183.0 197 50.3
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.8e-43 181.0 175 53.7
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.8e-40 171.0 175 50.9
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 8.2e-33 145.6 154 50.6
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 3.8e-30 136.7 143 54.5
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-30 136.0 172 47.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.9e-27 126.7 119 60.5
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.5e-22 109.0 267 32.2
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 4.2e-21 106.7 101 56.4
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.7e-20 104.0 228 37.3
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.6e-12 78.2 86 50.0
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.6e-12 78.2 86 50.0
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 6.1e-12 76.3 80 53.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 5.2e-11 73.2 205 34.6
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 7.5e-10 69.3 57 63.2
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 5.3e-08 63.2 54 63.0
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 5.3e-08 63.2 54 63.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 8.5e-06 55.8 81 46.9


User provided reference genes

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