Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 7.4e-184 647.1 341 100.0
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 1.4e-12 78.2 278 29.1
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 1.8e-12 77.8 249 26.9
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 2.3e-12 77.4 292 29.1
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 2.3e-12 77.4 144 41.7
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 3.1e-12 77.0 250 27.2
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 4.0e-12 76.6 143 35.0
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 4.0e-12 76.6 143 35.0
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 4.0e-12 76.6 143 36.4
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 5.2e-12 76.3 144 36.1
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 5.2e-12 76.3 144 36.1
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 8.9e-12 75.5 145 37.9
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.2e-11 75.1 146 36.3
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.2e-11 75.1 145 34.5
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 1.5e-11 74.7 285 30.9
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.5e-11 74.7 145 39.3
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 1.5e-11 74.7 145 36.6
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 2.0e-11 74.3 151 34.4
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 2.6e-11 73.9 257 28.8
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 2.6e-11 73.9 145 35.9
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 2.6e-11 73.9 151 34.4
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.4e-11 73.6 145 36.6
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 3.4e-11 73.6 138 36.2
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 3.4e-11 73.6 144 38.2
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 3.4e-11 73.6 279 27.2
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 4.4e-11 73.2 145 36.6
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 4.4e-11 73.2 145 36.6
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 4.4e-11 73.2 143 33.6
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 5.8e-11 72.8 147 38.8
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 5.8e-11 72.8 151 33.8
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 7.6e-11 72.4 149 36.2
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 7.6e-11 72.4 143 33.6
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 9.9e-11 72.0 147 36.7
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 1.3e-10 71.6 152 37.5
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 1.3e-10 71.6 146 37.7
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.3e-10 71.6 151 33.8
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.3e-10 71.6 151 33.8
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.3e-10 71.6 151 33.8
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.3e-10 71.6 151 33.8
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 1.3e-10 71.6 152 35.5
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.7e-10 71.2 138 37.7
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.7e-10 71.2 151 33.8
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.7e-10 71.2 152 33.6
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 1.7e-10 71.2 152 33.6
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 1.7e-10 71.2 156 33.3
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 1.7e-10 71.2 143 37.1
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.7e-10 71.2 257 28.0
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 2.2e-10 70.9 282 27.0
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 2.2e-10 70.9 145 33.8
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 2.2e-10 70.9 212 32.1
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 2.9e-10 70.5 151 33.1
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 2.9e-10 70.5 145 35.2
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 3.8e-10 70.1 328 28.7
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 3.8e-10 70.1 143 32.9
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 3.8e-10 70.1 144 42.4
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.8e-10 70.1 145 35.9
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 4.9e-10 69.7 145 35.2
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 4.9e-10 69.7 148 35.1
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 4.9e-10 69.7 143 32.9
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 4.9e-10 69.7 151 37.1
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 4.9e-10 69.7 152 35.5
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 6.4e-10 69.3 335 27.5
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 6.4e-10 69.3 143 32.9
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 6.4e-10 69.3 143 33.6
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 6.4e-10 69.3 144 37.5
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 6.4e-10 69.3 145 34.5
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 8.4e-10 68.9 145 34.5
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 8.4e-10 68.9 145 30.3
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 8.4e-10 68.9 145 36.6
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 8.4e-10 68.9 206 32.5
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 1.1e-09 68.6 145 36.6
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 1.1e-09 68.6 149 32.2
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.1e-09 68.6 145 35.2
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.1e-09 68.6 152 34.9
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 1.1e-09 68.6 143 31.5
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 1.1e-09 68.6 139 37.4
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.4e-09 68.2 149 34.2
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 1.9e-09 67.8 145 33.8
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.9e-09 67.8 286 29.0
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.4e-09 67.4 145 35.2
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.4e-09 67.4 147 34.0
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 3.2e-09 67.0 145 35.9
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 4.1e-09 66.6 145 33.8
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 4.1e-09 66.6 145 33.1
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 4.1e-09 66.6 146 34.2
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 4.1e-09 66.6 142 35.2
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 4.1e-09 66.6 142 35.2
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 4.1e-09 66.6 145 35.9
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 4.1e-09 66.6 145 35.2
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 5.4e-09 66.2 145 33.8
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 5.4e-09 66.2 145 34.5
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 5.4e-09 66.2 145 35.9
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 5.4e-09 66.2 139 36.0
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 5.4e-09 66.2 272 27.6
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 5.4e-09 66.2 183 29.0
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 5.4e-09 66.2 237 27.0
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 5.4e-09 66.2 253 28.5
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 7.1e-09 65.9 145 35.2
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 7.1e-09 65.9 151 33.1
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 7.1e-09 65.9 146 34.9
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 7.1e-09 65.9 159 34.0
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 9.2e-09 65.5 145 34.5
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 9.2e-09 65.5 145 32.4
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 9.2e-09 65.5 139 36.7
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 9.2e-09 65.5 142 34.5
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 1.2e-08 65.1 149 32.9
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 1.2e-08 65.1 143 31.5
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.2e-08 65.1 142 35.9
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 1.2e-08 65.1 142 35.9
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 2.1e-08 64.3 145 35.9
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.7e-08 63.9 306 25.2
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 2.7e-08 63.9 136 32.4
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.7e-08 63.9 35 71.4
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.7e-08 63.9 35 71.4
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 4.6e-08 63.2 148 31.8
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 7.8e-08 62.4 108 34.3
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.0e-07 62.0 140 34.3
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 1.0e-07 62.0 140 34.3
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 1.0e-07 62.0 148 30.4
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 1.0e-07 62.0 282 24.5
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.3e-07 61.6 148 31.1
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 1.3e-07 61.6 160 31.2
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 1.3e-07 61.6 139 35.3
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 1.3e-07 61.6 145 31.0
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 1.3e-07 61.6 148 31.1
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 1.3e-07 61.6 130 31.5
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 1.3e-07 61.6 143 32.9
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 2.3e-07 60.8 152 31.6
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 2.3e-07 60.8 152 31.6
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 2.3e-07 60.8 152 31.6
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 2.3e-07 60.8 35 71.4
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.3e-07 60.8 35 71.4
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 2.3e-07 60.8 35 71.4
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 2.3e-07 60.8 35 71.4
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.0e-07 60.5 142 33.8
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 3.0e-07 60.5 147 30.6
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 3.0e-07 60.5 35 68.6
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 3.0e-07 60.5 35 71.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.1e-07 59.7 35 65.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.1e-07 59.7 35 65.7
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.6e-07 58.9 145 30.3
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 8.6e-07 58.9 35 65.7
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 8.6e-07 58.9 35 65.7
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 1.9e-06 57.8 44 52.3
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 2.5e-06 57.4 147 31.3
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 3.3e-06 57.0 149 30.9
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 3.3e-06 57.0 147 31.3
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 3.3e-06 57.0 35 65.7
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.3e-06 57.0 32 71.9
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 4.3e-06 56.6 35 65.7
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.3e-06 55.8 29 72.4
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 9.6e-06 55.5 122 30.3
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 9.6e-06 55.5 36 61.1
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 9.6e-06 55.5 129 36.4


User provided reference genes

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