Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022282 Carpinus fangiana HOM05D041223 ORTHO05D125868 0.0e+00 1787.7 888 100.0
Cfa024014 Carpinus fangiana HOM05D041223 ORTHO05D126306 1.1e-40 172.9 440 31.6
MCO03G255 Micromonas commoda HOM05D006607 ORTHO05D008166 3.5e-15 88.2 241 33.6
Solyc10g086500.1 Solanum lycopersicum HOM05D006607 ORTHO05D008166 5.0e-14 84.3 273 26.4
CAN.G1195.8 Capsicum annuum HOM05D006607 ORTHO05D008166 6.5e-14 84.0 272 26.1
Mapoly0170s0018 Marchantia polymorpha HOM05D006607 ORTHO05D008166 8.5e-14 83.6 190 27.4
SalBow4G0305 Salvia bowleyana HOM05D006607 ORTHO05D008166 4.2e-13 81.3 254 27.6
Sopen10g035880 Solanum pennellii HOM05D006607 ORTHO05D008166 4.2e-13 81.3 273 26.0
CAN.G1195.9 Capsicum annuum HOM05D006607 ORTHO05D008166 2.1e-12 79.0 262 26.0
Lj1g0013091 Lotus japonicus HOM05D006607 ORTHO05D008166 2.7e-12 78.6 250 26.4
COL.COLO4_14613 Corchorus olitorius HOM05D006607 ORTHO05D008166 5.2e-11 74.3 241 29.0
Os11g0184100 Oryza sativa ssp. japonica HOM05D006607 ORTHO05D008166 5.2e-11 74.3 282 28.7
AUR62011054 Chenopodium quinoa HOM05D006607 ORTHO05D008166 6.8e-11 73.9 247 25.9
AUR62033432 Chenopodium quinoa HOM05D006607 ORTHO05D008166 6.8e-11 73.9 242 25.6
Ah.09g227670 Amaranthus hybridus HOM05D006607 ORTHO05D008166 1.2e-10 73.2 251 25.5
Glyma.07G144400 Glycine max HOM05D006607 ORTHO05D008166 1.2e-10 73.2 254 28.7
Phvul.008G108600 Phaseolus vulgaris HOM05D006607 ORTHO05D008166 3.4e-10 71.6 260 28.5
PGR031G1704 Punica granatum HOM05D006607 ORTHO05D008166 3.4e-10 71.6 255 27.8
Medtr4g064025 Medicago truncatula HOM05D006607 ORTHO05D008166 4.4e-10 71.2 254 26.0
Sopen09g006910 Solanum pennellii HOM05D006607 ORTHO05D008166 7.5e-10 70.5 236 26.7
COL.COLO4_14612 Corchorus olitorius HOM05D006607 ORTHO05D008166 9.8e-10 70.1 245 27.8
MBI05_g03439_MAGBIO Magnolia biondii HOM05D006607 ORTHO05D008166 9.8e-10 70.1 249 27.3
Peaxi162Scf00330g00043 Petunia axillaris HOM05D006607 ORTHO05D008166 9.8e-10 70.1 278 24.8
PGSC0003DMG400020353 Solanum tuberosum HOM05D006607 ORTHO05D008166 9.8e-10 70.1 272 25.0
Os01g0851600 Oryza sativa ssp. japonica HOM05D006607 ORTHO05D008166 1.3e-09 69.7 248 27.4
CAN.G284.7 Capsicum annuum HOM05D006607 ORTHO05D008166 2.8e-09 68.6 250 26.4
Nn2g13597 Nelumbo nucifera HOM05D006607 ORTHO05D008166 2.8e-09 68.6 250 28.8
Glyma.11G010000 Glycine max HOM05D006607 ORTHO05D008166 3.7e-09 68.2 252 28.2
Oeu040800.1 Olea europaea HOM05D006607 ORTHO05D008166 4.8e-09 67.8 249 24.5
Nitab4.5_0004827g0020 Nicotiana tabacum HOM05D006607 ORTHO05D008166 6.3e-09 67.4 204 25.5
Thecc.05G022900 Theobroma cacao HOM05D006607 ORTHO05D008166 6.3e-09 67.4 237 28.3
SGA_v2.0_scaffold85G26768 Striga asiatica HOM05D006607 ORTHO05D008166 8.3e-09 67.0 260 26.2
TWI53G2038 Tripterygium wilfordii HOM05D006607 ORTHO05D008166 8.3e-09 67.0 235 26.8
CDE04G3256 Ceratophyllum demersum HOM05D006607 ORTHO05D008166 1.4e-08 66.2 252 24.2
THA.LOC104806524 Tarenaya hassleriana HOM05D006607 ORTHO05D008166 1.8e-08 65.9 231 26.0
Atru.chr8.2182 Acer truncatum HOM05D006607 ORTHO05D008166 2.4e-08 65.5 233 26.2
Gohir.D04G128400 Gossypium hirsutum HOM05D006607 ORTHO05D008166 3.1e-08 65.1 243 28.0
Gorai.012G111500 Gossypium raimondii HOM05D006607 ORTHO05D008166 3.1e-08 65.1 243 28.0
Lalb_Chr19g0124781 Lupinus albus HOM05D006607 ORTHO05D008166 3.1e-08 65.1 252 26.6
Nitab4.5_0001911g0020 Nicotiana tabacum HOM05D006607 ORTHO05D008166 3.1e-08 65.1 195 26.7
VMungo1383G1434 Vigna mungo HOM05D006607 ORTHO05D008166 5.4e-08 64.3 262 26.7
ATR0618G398 Amborella trichopoda HOM05D006607 ORTHO05D008166 9.1e-08 63.5 253 25.3
Ca_23721_v3 Cicer arietinum L. HOM05D006607 ORTHO05D008166 1.6e-07 62.8 254 24.0
Cfa026014 Carpinus fangiana HOM05D041223 ORTHO05D125062 2.0e-07 62.4 174 26.4
Cc06_g01710 Coffea canephora HOM05D006607 ORTHO05D008166 2.0e-07 62.4 302 25.8
Nitab4.5_0000008g0640 Nicotiana tabacum HOM05D006607 ORTHO05D008166 2.0e-07 62.4 204 25.0
Nitab4.5_0000349g0270 Nicotiana tabacum HOM05D006607 ORTHO05D008166 4.5e-07 61.2 125 30.4
Sc07g0006860 Simmondsia chinensis HOM05D006607 ORTHO05D008166 4.5e-07 61.2 248 26.2
CSS0045140 Camellia sinensis var. sinensis HOM05D006607 ORTHO05D008166 5.9e-07 60.8 249 24.9
Gohir.A04G088000 Gossypium hirsutum HOM05D006607 ORTHO05D008166 5.9e-07 60.8 240 28.8
Peaxi162Scf00330g00031 Petunia axillaris HOM05D006607 ORTHO05D008166 5.9e-07 60.8 163 27.0
C03p08730 Brassica napus HOM05D002667 ORTHO05D002909 1.0e-06 60.1 145 28.3
BolC3t13371H Brassica oleracea HOM05D002667 ORTHO05D002909 1.0e-06 60.1 145 28.3
BcaB01g05009 Brassica carinata HOM05D002667 ORTHO05D002909 1.3e-06 59.7 145 28.3
CARHR197310 Cardamine hirsuta HOM05D002667 ORTHO05D002909 1.3e-06 59.7 145 27.6
A03p07520 Brassica napus HOM05D002667 ORTHO05D002909 1.7e-06 59.3 145 28.3
BraA03t10080Z Brassica rapa HOM05D002667 ORTHO05D002909 1.7e-06 59.3 145 28.3
CANSAT35G1770 Cannabis sativa HOM05D006607 ORTHO05D008166 2.3e-06 58.9 248 25.0
AL6G26880 Arabidopsis lyrata HOM05D002667 ORTHO05D002909 2.9e-06 58.5 144 27.8
Cpa.g.sc56.108 Carica papaya HOM05D006607 ORTHO05D008166 3.8e-06 58.2 241 25.7
Duzib128G1357 Durio zibethinus HOM05D006607 ORTHO05D008166 5.0e-06 57.8 250 27.2
CANSAT56G4413 Cannabis sativa HOM05D002667 ORTHO05D002909 8.6e-06 57.0 144 27.8
Lj3P942T23 Lonicera japonica HOM05D006607 ORTHO05D008166 8.6e-06 57.0 248 26.2
Sp6g28110 Schrenkiella parvula HOM05D002667 ORTHO05D002909 8.6e-06 57.0 144 26.4


User provided reference genes

Program Settings