Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022254 Carpinus fangiana HOM05D002403 ORTHO05D122021 0.0e+00 1973.7 988 100.0
Cre06.g273750 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D011688 4.1e-09 68.2 232 26.3
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 5.4e-09 67.8 426 24.9
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 9.2e-09 67.0 414 24.4
SGA_v2.0_scaffold73G24196 Striga asiatica HOM05D000419 ORTHO05D001071 9.2e-09 67.0 271 26.9
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 1.6e-08 66.2 414 24.4
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 2.7e-08 65.5 415 23.1
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 2.7e-08 65.5 425 23.8
HPP92_025182 Vanilla planifolia HOM05D000419 ORTHO05D001071 3.5e-08 65.1 228 26.8
DCAR_024409 Daucus carota HOM05D000419 ORTHO05D001071 6.0e-08 64.3 276 23.2
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 6.0e-08 64.3 427 24.1
Ca_28946_v3 Cicer arietinum L. HOM05D000681 ORTHO05D017301 7.8e-08 63.9 425 20.5
Haze_23228 Corylus avellana HOM05D000419 ORTHO05D001071 7.8e-08 63.9 248 26.2
Prupe.4G266200 Prunus persica HOM05D000419 ORTHO05D001071 7.8e-08 63.9 206 26.2
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.0e-07 63.5 425 24.0
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.0e-07 63.5 425 24.0
AagrBONN_evm.TU.Sc2ySwM_228.77 Anthoceros agrestis HOM05D000068 ORTHO05D011688 1.3e-07 63.2 258 25.6
Haze_26989 Corylus avellana HOM05D000681 ORTHO05D017301 1.3e-07 63.2 394 22.1
TAR636G0835 Trochodendron aralioides HOM05D000419 ORTHO05D001071 1.3e-07 63.2 265 24.5
QL01p017183 Quercus lobata HOM05D000419 ORTHO05D001071 1.7e-07 62.8 237 24.5
ClCG02G022850 Citrullus lanatus HOM05D000419 ORTHO05D001071 2.3e-07 62.4 263 25.1
Haze_26148 Corylus avellana HOM05D000435 ORTHO05D165366 3.0e-07 62.0 182 29.7
Dinv36167 Davidia involucrata HOM05D000419 ORTHO05D001071 3.0e-07 62.0 272 22.8
C05p43010 Brassica napus HOM05D000386 ORTHO05D000406 3.9e-07 61.6 214 27.1
BolC5t33032H Brassica oleracea HOM05D000386 ORTHO05D000406 3.9e-07 61.6 214 27.1
FvH4_3g28480 Fragaria vesca HOM05D000386 ORTHO05D000406 3.9e-07 61.6 179 27.9
Zm00001eb434550 Zea mays HOM05D000419 ORTHO05D001071 3.9e-07 61.6 189 28.6
CBR_g19325 Chara braunii HOM05D000019 ORTHO05D000430 5.0e-07 61.2 185 28.1
Mapoly0011s0127 Marchantia polymorpha HOM05D000386 ORTHO05D000406 5.0e-07 61.2 183 26.8
Zm00001eb395610 Zea mays HOM05D002403 ORTHO05D002724 5.0e-07 61.2 261 26.1
ATR0188G019 Amborella trichopoda HOM05D000610 ORTHO05D004774 6.6e-07 60.8 180 26.7
Cfa009852 Carpinus fangiana HOM05D000419 ORTHO05D001071 6.6e-07 60.8 221 26.7
SGA_v2.0_scaffold29G12321 Striga asiatica HOM05D000386 ORTHO05D000406 6.6e-07 60.8 190 26.8
A05p27630 Brassica napus HOM05D000386 ORTHO05D000406 8.6e-07 60.5 214 27.1
BraA05t21657Z Brassica rapa HOM05D000386 ORTHO05D000406 8.6e-07 60.5 214 27.1
Glyma.11G093800 Glycine max HOM05D000386 ORTHO05D000406 8.6e-07 60.5 314 23.6
MD11G1185400 Malus domestica HOM05D000419 ORTHO05D001071 8.6e-07 60.5 208 26.0
MCO16G651 Micromonas commoda HOM05D000610 ORTHO05D004774 8.6e-07 60.5 180 28.3
PSO210G3230 Papaver somniferum HOM05D000435 ORTHO05D000430 8.6e-07 60.5 289 23.2
Sp1g38140 Schrenkiella parvula HOM05D000386 ORTHO05D000406 8.6e-07 60.5 214 26.2
MSTRG.18442 Avicennia marina HOM05D000386 ORTHO05D000406 1.1e-06 60.1 182 26.4
BcaC05g28219 Brassica carinata HOM05D000386 ORTHO05D000406 1.1e-06 60.1 214 26.6
Eucgr.H01294 Eucalyptus grandis HOM05D002403 ORTHO05D002724 1.5e-06 59.7 229 24.5
Actinidia01670 Actinidia chinensis HOM05D002403 ORTHO05D002724 1.9e-06 59.3 254 24.4
CBR_g54923 Chara braunii HOM05D000386 ORTHO05D000406 1.9e-06 59.3 226 25.7
Ca_29125_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 1.9e-06 59.3 177 26.6
CsaV3_6G038990 Cucumis sativus L. HOM05D000419 ORTHO05D001071 1.9e-06 59.3 263 23.2
QL08p041434 Quercus lobata HOM05D000419 ORTHO05D001071 1.9e-06 59.3 222 25.2
CARHR041660 Cardamine hirsuta HOM05D000386 ORTHO05D000406 2.5e-06 58.9 209 24.4
Cre01.g007000 Chlamydomonas reinhardtii HOM05D000103 ORTHO05D016932 2.5e-06 58.9 252 25.4
Phvul.011G022900 Phaseolus vulgaris HOM05D000386 ORTHO05D000406 2.5e-06 58.9 219 25.6
Sopen03g003620 Solanum pennellii HOM05D000419 ORTHO05D001071 2.5e-06 58.9 290 24.5
Zm00001eb350510 Zea mays HOM05D000386 ORTHO05D000406 2.5e-06 58.9 178 28.1
AL1G59390 Arabidopsis lyrata HOM05D000386 ORTHO05D000406 3.3e-06 58.5 209 24.9
AT1G51500 Arabidopsis thaliana HOM05D000386 ORTHO05D000406 3.3e-06 58.5 209 24.9
Carub.0001s4035 Capsella rubella HOM05D000386 ORTHO05D000406 3.3e-06 58.5 209 24.9
Cre06.g265100 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D034395 3.3e-06 58.5 193 31.1
Nitab4.5_0006023g0010 Nicotiana tabacum HOM05D000419 ORTHO05D001071 3.3e-06 58.5 235 26.8
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 3.3e-06 58.5 425 23.8
SGA_v2.0_scaffold8G04575 Striga asiatica HOM05D000386 ORTHO05D000406 3.3e-06 58.5 220 25.9
Thecc.09G248600 Theobroma cacao HOM05D000419 ORTHO05D001071 3.3e-06 58.5 228 25.4
GSVIVG01031528001 Vitis vinifera HOM05D000386 ORTHO05D000406 3.3e-06 58.5 218 25.2
Aa31LG10G3260 Aethionema arabicum HOM05D000386 ORTHO05D000406 4.3e-06 58.2 214 25.7
AL1G59350 Arabidopsis lyrata HOM05D000386 ORTHO05D000406 4.3e-06 58.2 185 28.1
AT1G51460 Arabidopsis thaliana HOM05D000386 ORTHO05D000406 4.3e-06 58.2 185 28.1
A10p33350 Brassica napus HOM05D002403 ORTHO05D002724 4.3e-06 58.2 229 23.6
BraA10t45366Z Brassica rapa HOM05D002403 ORTHO05D002724 4.3e-06 58.2 229 23.6
Cfa022941 Carpinus fangiana HOM05D000419 ORTHO05D001071 4.3e-06 58.2 214 25.7
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 4.3e-06 58.2 420 23.6
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 4.3e-06 58.2 203 26.1
Thhalv10011278m.g Eutrema salsugineum HOM05D000386 ORTHO05D000406 4.3e-06 58.2 214 25.7
Lju99C10T11 Lonicera japonica HOM05D002403 ORTHO05D002724 4.3e-06 58.2 277 24.5
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 4.3e-06 58.2 427 22.7
Nitab4.5_0000496g0120 Nicotiana tabacum HOM05D000419 ORTHO05D001071 4.3e-06 58.2 207 25.6
Sp3g19040 Schrenkiella parvula HOM05D000386 ORTHO05D000406 4.3e-06 58.2 209 25.4
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 4.3e-06 58.2 435 21.1
VMungo1127G0050 Vigna mungo HOM05D000386 ORTHO05D000406 4.3e-06 58.2 219 25.1
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 4.3e-06 58.2 400 22.2
Aa31LG10G3610 Aethionema arabicum HOM05D000386 ORTHO05D000406 5.6e-06 57.8 180 26.7
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 5.6e-06 57.8 409 22.0
CBR_g50640 Chara braunii HOM05D000435 ORTHO05D000430 5.6e-06 57.8 185 26.5
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 5.6e-06 57.8 421 23.8
Os05g0384600 Oryza sativa ssp. japonica HOM05D000419 ORTHO05D001071 5.6e-06 57.8 232 28.0
PGSC0003DMG400020888 Solanum tuberosum HOM05D000419 ORTHO05D001071 5.6e-06 57.8 290 24.1
TWI23G0277 Tripterygium wilfordii HOM05D000419 ORTHO05D001071 5.6e-06 57.8 196 28.1
CAN.G126.8 Capsicum annuum HOM05D000419 ORTHO05D001071 7.3e-06 57.4 228 27.2
Cpa.g.sc157.65 Carica papaya HOM05D000419 ORTHO05D001071 7.3e-06 57.4 253 23.3
Cpa.g.sc224.8 Carica papaya HOM05D000610 ORTHO05D004774 7.3e-06 57.4 188 27.7
FvH4_6g27140 Fragaria vesca HOM05D000419 ORTHO05D001071 7.3e-06 57.4 213 27.2
FAN14G3998 Fragaria x ananassa HOM05D000419 ORTHO05D001071 7.3e-06 57.4 213 27.2
Nitab4.5_0004644g0020 Nicotiana tabacum HOM05D000419 ORTHO05D001071 7.3e-06 57.4 216 23.6
Os05g0222200 Oryza sativa ssp. japonica HOM05D000386 ORTHO05D000406 7.3e-06 57.4 178 27.5
PRCOL_00000569 Prasinoderma coloniale HOM05D000103 ORTHO05D016932 7.3e-06 57.4 187 26.2
SEGI_26325 Sequoiadendron giganteum HOM05D000435 ORTHO05D000430 7.3e-06 57.4 197 26.9
AUR62019328 Chenopodium quinoa HOM05D000386 ORTHO05D000406 9.5e-06 57.0 216 25.0
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 9.5e-06 57.0 423 23.9
Lsat_1_v5_gn_6_25741 Lactuca sativa HOM05D000386 ORTHO05D000406 9.5e-06 57.0 211 26.1
Medtr2g078080 Medicago truncatula HOM05D000419 ORTHO05D001071 9.5e-06 57.0 223 26.5
PRCOL_00003673 Prasinoderma coloniale HOM05D002403 ORTHO05D002724 9.5e-06 57.0 255 23.5


User provided reference genes

Program Settings