Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022237 Carpinus fangiana HOM05D003298 ORTHO05D126281 1.2e-310 1068.9 528 100.0
CBR_g30252 Chara braunii HOM05D003298 ORTHO05D003827 9.3e-16 89.4 105 47.6
PRCOL_00002028 Prasinoderma coloniale HOM05D003298 ORTHO05D003827 6.0e-15 86.7 152 38.2
CBR_g33921 Chara braunii HOM05D003298 ORTHO05D003827 5.1e-14 83.6 105 43.8
Pp3c24_19370 Physcomitrium patens HOM05D003298 ORTHO05D003827 8.7e-14 82.8 105 44.8
Pp3c8_17050 Physcomitrium patens HOM05D003298 ORTHO05D003827 4.3e-13 80.5 105 44.8
CsaV3_2G026040 Cucumis sativus L. HOM05D003298 ORTHO05D003827 2.1e-12 78.2 107 42.1
Manes.05G182400 Manihot esculenta HOM05D003298 ORTHO05D003827 2.8e-12 77.8 119 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4005 Anthoceros agrestis HOM05D003298 ORTHO05D003827 3.6e-12 77.4 105 40.0
Eucgr.I00697 Eucalyptus grandis HOM05D003298 ORTHO05D003827 3.6e-12 77.4 131 38.9
Cre03.g146247 Chlamydomonas reinhardtii HOM05D003298 ORTHO05D003827 6.2e-12 76.6 111 39.6
Ciclev10026686m.g Citrus clementina HOM05D003298 ORTHO05D003827 6.2e-12 76.6 107 43.0
MELO3C010798.2 Cucumis melo HOM05D003298 ORTHO05D003827 6.2e-12 76.6 107 42.1
SMO353G0005 Selaginella moellendorffii HOM05D003298 ORTHO05D003827 6.2e-12 76.6 96 42.7
Hma1.2p1_0210F.1_g089430 Hydrangea macrophylla HOM05D003298 ORTHO05D003827 8.1e-12 76.3 136 38.2
CANSAT01G1569 Cannabis sativa HOM05D003298 ORTHO05D003827 1.1e-11 75.9 131 39.7
Mapoly0079s0047 Marchantia polymorpha HOM05D003298 ORTHO05D003827 1.1e-11 75.9 105 41.9
Zm00001eb108030 Zea mays HOM05D003298 ORTHO05D003827 1.1e-11 75.9 132 38.6
MSTRG.3473 Avicennia marina HOM05D003298 ORTHO05D003827 1.4e-11 75.5 119 38.7
CANSAT25G0421 Cannabis sativa HOM05D003298 ORTHO05D003827 1.4e-11 75.5 119 39.5
Cpa.g.sc6.9 Carica papaya HOM05D003298 ORTHO05D003827 1.4e-11 75.5 115 41.7
CBR_g31824 Chara braunii HOM05D003298 ORTHO05D003827 1.4e-11 75.5 105 42.9
Cc07_g07160 Coffea canephora HOM05D003298 ORTHO05D003827 1.4e-11 75.5 107 41.1
CsaV3_6G044180 Cucumis sativus L. HOM05D003298 ORTHO05D003827 1.4e-11 75.5 107 43.0
Glyma.05G106100 Glycine max HOM05D003298 ORTHO05D003827 1.4e-11 75.5 119 39.5
Sc15g0005640 Simmondsia chinensis HOM05D003298 ORTHO05D003827 1.4e-11 75.5 119 37.8
Migut.L00218 Erythranthe guttata HOM05D003298 ORTHO05D003827 1.8e-11 75.1 133 38.3
Hund05294 Selenicereus undatus HOM05D003298 ORTHO05D003827 1.8e-11 75.1 107 42.1
AUR62022470 Chenopodium quinoa HOM05D003298 ORTHO05D003827 2.4e-11 74.7 107 42.1
DCAR_012818 Daucus carota HOM05D003298 ORTHO05D003827 2.4e-11 74.7 105 41.9
Lj5g0014523 Lotus japonicus HOM05D003298 ORTHO05D003827 2.4e-11 74.7 107 42.1
Nn5g30611 Nelumbo nucifera HOM05D003298 ORTHO05D003827 2.4e-11 74.7 119 39.5
unitig_748.g8592 Utricularia gibba HOM05D003298 ORTHO05D003827 2.4e-11 74.7 129 35.7
Ah.05g167060 Amaranthus hybridus HOM05D003298 ORTHO05D003827 3.1e-11 74.3 107 41.1
Glyma.17G160400 Glycine max HOM05D003298 ORTHO05D003827 3.1e-11 74.3 107 41.1
Potri.002G117800 Populus trichocarpa HOM05D003298 ORTHO05D003827 3.1e-11 74.3 125 40.0
SalBow3G3650 Salvia bowleyana HOM05D003298 ORTHO05D003827 3.1e-11 74.3 129 37.2
THA.LOC104825783 Tarenaya hassleriana HOM05D003298 ORTHO05D003827 3.1e-11 74.3 119 37.8
ECA232G0317 Erigeron canadensis HOM05D003298 ORTHO05D003827 4.0e-11 73.9 117 39.3
Migut.H00342 Erythranthe guttata HOM05D003298 ORTHO05D003827 4.0e-11 73.9 135 37.8
Gohir.A11G048600 Gossypium hirsutum HOM05D003298 ORTHO05D003827 4.0e-11 73.9 119 37.8
Gohir.D11G052200 Gossypium hirsutum HOM05D003298 ORTHO05D003827 4.0e-11 73.9 119 37.8
Gorai.007G056600 Gossypium raimondii HOM05D003298 ORTHO05D003827 4.0e-11 73.9 119 37.8
BolC9t53976H Brassica oleracea HOM05D003298 ORTHO05D003827 5.3e-11 73.6 105 40.0
ClCG01G017640 Citrullus lanatus HOM05D003298 ORTHO05D003827 6.9e-11 73.2 107 41.1
COL.COLO4_28494 Corchorus olitorius HOM05D003298 ORTHO05D003827 6.9e-11 73.2 117 39.3
Manes.13G110900 Manihot esculenta HOM05D003298 ORTHO05D003827 6.9e-11 73.2 131 37.4
AL8G43710 Arabidopsis lyrata HOM05D003298 ORTHO05D003827 9.0e-11 72.8 105 41.9
AT5G67590 Arabidopsis thaliana HOM05D003298 ORTHO05D003827 9.0e-11 72.8 105 41.9
Lsat_1_v5_gn_9_75781 Lactuca sativa HOM05D003298 ORTHO05D003827 9.0e-11 72.8 119 38.7
Os07g0585800 Oryza sativa ssp. japonica HOM05D003298 ORTHO05D003827 9.0e-11 72.8 132 37.1
ATR0739G156 Amborella trichopoda HOM05D003298 ORTHO05D003827 1.2e-10 72.4 119 39.5
Aqoxy5G00858 Aquilegia oxysepala HOM05D003298 ORTHO05D003827 1.2e-10 72.4 107 40.2
MSTRG.15348 Avicennia marina HOM05D003298 ORTHO05D003827 1.2e-10 72.4 107 39.3
BraA09t36578Z Brassica rapa HOM05D003298 ORTHO05D003827 1.2e-10 72.4 105 40.0
CDE02G3189 Ceratophyllum demersum HOM05D003298 ORTHO05D003827 1.2e-10 72.4 107 41.1
Gohir.A05G210600 Gossypium hirsutum HOM05D003298 ORTHO05D003827 1.2e-10 72.4 107 40.2
SGA_v2.0_scaffold15G07465 Striga asiatica HOM05D003298 ORTHO05D003827 1.2e-10 72.4 107 39.3
Sed0023270 Sechium edule HOM05D003298 ORTHO05D003827 1.5e-10 72.0 105 42.9
TWI12G0106 Tripterygium wilfordii HOM05D003298 ORTHO05D003827 1.5e-10 72.0 105 42.9
EL10Ac1g02370 Beta vulgaris HOM05D003298 ORTHO05D003827 2.0e-10 71.6 105 41.0
Nn1g04538 Nelumbo nucifera HOM05D003298 ORTHO05D003827 2.0e-10 71.6 107 39.3
Rhsim06G0062700 Rhododendron simsii HOM05D003298 ORTHO05D003827 2.0e-10 71.6 119 39.5
Sc02g0007940 Simmondsia chinensis HOM05D003298 ORTHO05D003827 2.0e-10 71.6 119 38.7
GSVIVG01002385001 Vitis vinifera HOM05D003298 ORTHO05D003827 2.0e-10 71.6 107 42.1
BcaB04g20042 Brassica carinata HOM05D003298 ORTHO05D003827 2.6e-10 71.2 105 40.0
CSS0022661 Camellia sinensis var. sinensis HOM05D003298 ORTHO05D003827 2.6e-10 71.2 131 38.9
Cfa004137 Carpinus fangiana HOM05D003298 ORTHO05D003827 2.6e-10 71.2 131 36.6
CiPaw.01G004000 Carya illinoinensis HOM05D003298 ORTHO05D003827 2.6e-10 71.2 131 36.6
CiPaw.07G174000 Carya illinoinensis HOM05D003298 ORTHO05D003827 2.6e-10 71.2 119 38.7
Gohir.D05G213900 Gossypium hirsutum HOM05D003298 ORTHO05D003827 2.6e-10 71.2 107 39.3
PSO017G4249 Papaver somniferum HOM05D003298 ORTHO05D003827 2.6e-10 71.2 119 37.8
Peaxi162Scf00548g00317 Petunia axillaris HOM05D003298 ORTHO05D003827 2.6e-10 71.2 115 38.3
QL06p039518 Quercus lobata HOM05D003298 ORTHO05D003827 2.6e-10 71.2 107 41.1
CDE04G0469 Ceratophyllum demersum HOM05D003298 ORTHO05D003827 3.4e-10 70.9 107 40.2
Gorai.009G220600 Gossypium raimondii HOM05D003298 ORTHO05D003827 3.4e-10 70.9 107 39.3
Oeu013325.3 Olea europaea HOM05D003298 ORTHO05D003827 3.4e-10 70.9 104 40.4
PSO170G5648 Papaver somniferum HOM05D003298 ORTHO05D003827 3.4e-10 70.9 119 37.8
Prupe.6G219700 Prunus persica HOM05D003298 ORTHO05D003827 3.4e-10 70.9 105 41.0
THA.LOC104827660 Tarenaya hassleriana HOM05D003298 ORTHO05D003827 3.4e-10 70.9 107 40.2
TAR381G0335 Trochodendron aralioides HOM05D003298 ORTHO05D003827 3.4e-10 70.9 131 36.6
VMungo0251G1543 Vigna mungo HOM05D003298 ORTHO05D003827 3.4e-10 70.9 107 41.1
A06p32830 Brassica napus HOM05D003298 ORTHO05D003827 4.4e-10 70.5 105 41.0
BraA06t26215Z Brassica rapa HOM05D003298 ORTHO05D003827 4.4e-10 70.5 105 41.0
CARHR280000 Cardamine hirsuta HOM05D003298 ORTHO05D003827 4.4e-10 70.5 105 40.0
Thhalv10005067m.g Eutrema salsugineum HOM05D003298 ORTHO05D003827 4.4e-10 70.5 105 40.0
Nitab4.5_0000142g0170 Nicotiana tabacum HOM05D003298 ORTHO05D003827 4.4e-10 70.5 137 36.5
Sp2g29060 Schrenkiella parvula HOM05D003298 ORTHO05D003827 4.4e-10 70.5 105 40.0
HPP92_004383 Vanilla planifolia HOM05D003298 ORTHO05D003827 4.4e-10 70.5 107 38.3
C09p10810 Brassica napus HOM05D003298 ORTHO05D003827 5.8e-10 70.1 105 38.1
Cfa013769 Carpinus fangiana HOM05D003298 ORTHO05D003827 5.8e-10 70.1 119 38.7
AUR62037418 Chenopodium quinoa HOM05D003298 ORTHO05D003827 5.8e-10 70.1 120 37.5
Dinv26938 Davidia involucrata HOM05D003298 ORTHO05D003827 5.8e-10 70.1 124 37.1
HanXRQChr11g0323111 Helianthus annuus HOM05D003298 ORTHO05D003827 5.8e-10 70.1 105 41.0
Lalb_Chr05g0213731 Lupinus albus HOM05D003298 ORTHO05D003827 5.8e-10 70.1 107 39.3
Nitab4.5_0004242g0010 Nicotiana tabacum HOM05D003298 ORTHO05D003827 5.8e-10 70.1 137 36.5
Prupe.1G421800 Prunus persica HOM05D003298 ORTHO05D003827 5.8e-10 70.1 127 37.8
Solyc02g092270.3 Solanum lycopersicum HOM05D003298 ORTHO05D003827 5.8e-10 70.1 107 40.2
Sopen02g036850 Solanum pennellii HOM05D003298 ORTHO05D003827 5.8e-10 70.1 107 40.2
CSS0029512 Camellia sinensis var. sinensis HOM05D003298 ORTHO05D003827 7.6e-10 69.7 131 38.9
Duzib147G0123 Durio zibethinus HOM05D003298 ORTHO05D003827 7.6e-10 69.7 119 37.8
ECA232G0962 Erigeron canadensis HOM05D003298 ORTHO05D003827 7.6e-10 69.7 115 37.4
Oeu014251.1 Olea europaea HOM05D003298 ORTHO05D003827 7.6e-10 69.7 92 43.5
Potri.007G005100 Populus trichocarpa HOM05D003298 ORTHO05D003827 7.6e-10 69.7 136 34.6
THA.LOC104821206 Tarenaya hassleriana HOM05D003298 ORTHO05D003827 7.6e-10 69.7 107 39.3
TPR.G24266 Trifolium pratense HOM05D003298 ORTHO05D003827 7.6e-10 69.7 107 39.3
Actinidia10204 Actinidia chinensis HOM05D003298 ORTHO05D003827 9.9e-10 69.3 104 41.3
BcaNung05863 Brassica carinata HOM05D003298 ORTHO05D003827 9.9e-10 69.3 105 40.0
BcaNung05868 Brassica carinata HOM05D003298 ORTHO05D003827 9.9e-10 69.3 105 40.0
Carub.0008s2688 Capsella rubella HOM05D003298 ORTHO05D003827 9.9e-10 69.3 105 40.0
MELO3C007641.2 Cucumis melo HOM05D003298 ORTHO05D003827 9.9e-10 69.3 92 43.5
Dinv44947 Davidia involucrata HOM05D003298 ORTHO05D003827 9.9e-10 69.3 99 41.4
RcHm_v2.0_Chr6g0309771 Rosa chinensis HOM05D003298 ORTHO05D003827 9.9e-10 69.3 107 39.3
Ca_22102_v3 Cicer arietinum L. HOM05D003298 ORTHO05D003827 1.3e-09 68.9 119 36.1
DCAR_025811 Daucus carota HOM05D003298 ORTHO05D003827 1.3e-09 68.9 86 45.3
MCO13G023 Micromonas commoda HOM05D003298 ORTHO05D003827 1.3e-09 68.9 92 44.6
Rhsim10G0099100 Rhododendron simsii HOM05D003298 ORTHO05D003827 1.3e-09 68.9 137 35.0
Zm00001eb325880 Zea mays HOM05D003298 ORTHO05D003827 1.3e-09 68.9 132 37.1
CAN.G1075.44 Capsicum annuum HOM05D003298 ORTHO05D003827 1.7e-09 68.6 119 37.8
Lalb_Chr09g0323641 Lupinus albus HOM05D003298 ORTHO05D003827 1.7e-09 68.6 107 39.3
Medtr4g097160 Medicago truncatula HOM05D003298 ORTHO05D003827 1.7e-09 68.6 107 38.3
TWI56G0806 Tripterygium wilfordii HOM05D003298 ORTHO05D003827 1.7e-09 68.6 119 37.8
ECA232G4822 Erigeron canadensis HOM05D003298 ORTHO05D003827 2.2e-09 68.2 102 40.2
MD02G1187000 Malus domestica HOM05D003298 ORTHO05D003827 2.2e-09 68.2 105 39.0
Actinidia34533 Actinidia chinensis HOM05D003298 ORTHO05D003827 2.9e-09 67.8 119 36.1
Lj4A71G62 Lonicera japonica HOM05D003298 ORTHO05D003827 2.9e-09 67.8 90 44.4
MD15G1298100 Malus domestica HOM05D003298 ORTHO05D003827 2.9e-09 67.8 105 39.0
QL05p065477 Quercus lobata HOM05D003298 ORTHO05D003827 2.9e-09 67.8 115 39.1
Duzib264G0522 Durio zibethinus HOM05D003298 ORTHO05D003827 3.8e-09 67.4 104 39.4
Lsat_1_v5_gn_4_161521 Lactuca sativa HOM05D003298 ORTHO05D003827 3.8e-09 67.4 90 42.2
MD08G1080900 Malus domestica HOM05D003298 ORTHO05D003827 3.8e-09 67.4 105 41.0
BolC3t18226H Brassica oleracea HOM05D003298 ORTHO05D003827 4.9e-09 67.0 105 39.0
COL.COLO4_11584 Corchorus olitorius HOM05D003298 ORTHO05D003827 4.9e-09 67.0 119 37.0
FvH4_1g17800 Fragaria vesca HOM05D003298 ORTHO05D003827 4.9e-09 67.0 105 40.0
FvH4_2g32930 Fragaria vesca HOM05D003298 ORTHO05D003827 4.9e-09 67.0 107 37.4
FAN19G0692 Fragaria x ananassa HOM05D003298 ORTHO05D003827 4.9e-09 67.0 105 40.0
BcaC04g23237 Brassica carinata HOM05D003298 ORTHO05D003827 6.4e-09 66.6 125 33.6
BcaNung05865 Brassica carinata HOM05D003298 ORTHO05D003827 6.4e-09 66.6 105 39.0
Haze_22427 Corylus avellana HOM05D003298 ORTHO05D003827 6.4e-09 66.6 86 46.5
Dinv04042 Davidia involucrata HOM05D003298 ORTHO05D003827 6.4e-09 66.6 113 39.8
FAN27G0325 Fragaria x ananassa HOM05D003298 ORTHO05D003827 8.4e-09 66.2 119 37.0
Psat4g081520 Pisum sativum HOM05D003298 ORTHO05D003827 8.4e-09 66.2 107 37.4
Haze_15276 Corylus avellana HOM05D003298 ORTHO05D003827 1.1e-08 65.9 88 43.2
FAN20G2949 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.1e-08 65.9 119 37.0
Thecc.01G073400 Theobroma cacao HOM05D003298 ORTHO05D003827 1.1e-08 65.9 107 39.3
TAR381G1316 Trochodendron aralioides HOM05D003298 ORTHO05D003827 1.1e-08 65.9 131 35.9
C03p59640 Brassica napus HOM05D003298 ORTHO05D003827 1.4e-08 65.5 105 38.1
FAN24G0284 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.9e-08 65.1 119 37.0
Nitab4.5_0000497g0130 Nicotiana tabacum HOM05D003298 ORTHO05D003827 1.9e-08 65.1 100 40.0
Lj7A107G20 Lonicera japonica HOM05D003298 ORTHO05D003827 2.4e-08 64.7 94 38.3
Aa31LG1G16140 Aethionema arabicum HOM05D003298 ORTHO05D003827 7.1e-08 63.2 95 37.9
A09p09250 Brassica napus HOM05D003298 ORTHO05D003827 7.1e-08 63.2 88 42.0
FAN15G0046 Fragaria x ananassa HOM05D003298 ORTHO05D003827 2.1e-07 61.6 119 36.1
Sabra02G0092500 Salix brachista HOM05D003298 ORTHO05D003827 1.0e-06 59.3 118 33.9
SEGI_29951 Sequoiadendron giganteum HOM05D003298 ORTHO05D003827 1.0e-06 59.3 73 45.2
ClCG08G016570 Citrullus lanatus HOM05D003298 ORTHO05D003827 2.3e-06 58.2 97 38.1
HanXRQChr12g0366921 Helianthus annuus HOM05D003298 ORTHO05D003827 3.0e-06 57.8 108 36.1


User provided reference genes

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